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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74327
CDX79940
CDX91918
CDY05010
CDY06929
CDY14061
CDY14765
CDY23854
CDY25575
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G06960.1 CDY25575 AT1G64280.1 10659709
AT5G06960.1 CDY34413 AT1G64280.1 10659709
AT5G06960.1 CDY25575 AT1G64280.1 10662863
AT5G06960.1 CDY34413 AT1G64280.1 10662863
AT5G06960.1 CDY25575 AT1G64280.1 12383081
AT5G06960.1 CDY34413 AT1G64280.1 12383081
AT5G06960.1 CDY25575 AT1G64280.1 15634206
AT5G06960.1 CDY34413 AT1G64280.1 15634206
AT5G06960.1 CDX79940 AT2G41370.1 21798944
AT5G06960.1 CDY06929 AT2G41370.1 21798944
AT5G06960.1 CDY14765 AT2G41370.1 21798944
AT5G06960.1 CDY23854 AT2G41370.1 21798944
AT5G06960.1 CDX74327 AT3G02000.1 19218396
AT5G06960.1 CDX91918 AT3G02000.1 19218396
AT5G06960.1 CDY05010 AT5G06960.1 17098811
AT5G06960.1 CDY14061 AT5G06960.1 17098811
AT5G06960.1 CDY05010 AT5G06960.1 21798944
AT5G06960.1 CDY14061 AT5G06960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028713.1-P Field mustard nucleus 99.69 99.69
CDY05010 Canola nucleus 99.69 99.69
AT5G06960.1 Thale cress nucleus 88.34 87.27
CDY08443 Canola nucleus 81.6 80.36
CDX70053 Canola nucleus 80.37 80.12
CDX98971 Canola nucleus 80.37 79.88
CDX73830 Canola nucleus 80.98 79.76
CDY00762 Canola nucleus 80.67 79.46
CDY50562 Canola nucleus 80.37 78.44
CDY52616 Canola nucleus 80.06 78.38
KRH36324 Soybean nucleus 75.46 74.1
GSMUA_Achr8P05800_001 Banana nucleus 75.15 73.8
Solyc11g064950.1.1 Tomato nucleus 73.31 73.77
PGSC0003DMT400024428 Potato nucleus 73.31 73.77
Os01t0279900-01 Rice nucleus 73.62 72.95
GSMUA_Achr3P25020_001 Banana nucleus 74.23 72.89
EES02530 Sorghum nucleus 73.01 72.12
Solyc01g008730.2.1 Tomato nucleus 72.09 71.87
TraesCS3A01G190700.2 Wheat nucleus 72.7 71.39
TraesCS3B01G220400.2 Wheat nucleus 72.7 71.39
KXG39494 Sorghum nucleus 73.01 71.04
HORVU3Hr1G042790.4 Barley nucleus 72.09 71.0
CDY42138 Canola nucleus 70.55 70.99
TraesCS3D01G194800.2 Wheat nucleus 72.09 70.78
HORVU3Hr1G042830.1 Barley cytosol, mitochondrion, nucleus, plastid 32.21 70.47
KXG36997 Sorghum nucleus 71.17 69.67
Os07t0687700-01 Rice nucleus 71.17 69.46
Zm00001d022542_P002 Maize nucleus 70.55 69.07
Os03t0318600-01 Rice nucleus 70.55 69.07
PGSC0003DMT400026710 Potato mitochondrion 37.12 68.75
TraesCS2B01G113200.2 Wheat nucleus 70.55 68.45
TraesCS2D01G096800.2 Wheat nucleus 70.55 68.45
TraesCS2A01G097500.2 Wheat nucleus 70.25 68.15
HORVU4Hr1G052330.3 Barley nucleus 69.33 67.66
TraesCS4B01G178600.1 Wheat nucleus 69.33 67.66
TraesCS4A01G126300.2 Wheat nucleus 69.33 67.46
TraesCS4D01G180200.4 Wheat nucleus 69.33 67.46
HORVU2Hr1G016580.5 Barley nucleus 68.71 66.47
KXG22247 Sorghum nucleus 61.35 60.24
Os05t0492000-00 Rice nucleus 59.51 58.79
Zm00001d008225_P001 Maize nucleus 73.31 56.9
KRG93068 Soybean nucleus 75.77 55.63
Zm00001d028936_P001 Maize nucleus 65.34 54.48
Zm00001d010658_P001 Maize nucleus 57.06 53.91
VIT_13s0084g00660.t01 Wine grape nucleus 77.3 53.73
KRH20680 Soybean nucleus 76.69 53.3
GSMUA_Achr10P... Banana nucleus 74.54 53.17
TraesCS1A01G096300.1 Wheat nucleus 53.68 52.24
TraesCS1B01G127400.1 Wheat nucleus 53.07 50.88
GSMUA_Achr11P... Banana nucleus 74.54 50.84
TraesCS1D01G105300.1 Wheat nucleus 52.76 50.74
KRH13334 Soybean nucleus 76.99 50.5
EES03778 Sorghum nucleus 71.78 50.0
HORVU3Hr1G079010.5 Barley nucleus 73.01 49.9
TraesCS3A01G334100.1 Wheat nucleus 72.7 49.89
TraesCS3B01G365100.1 Wheat nucleus 72.09 49.27
TraesCS3D01G327600.1 Wheat nucleus 72.09 49.27
CDY71150 Canola nucleus, plastid 29.14 47.98
HORVU1Hr1G068220.1 Barley nucleus 50.0 47.52
CDY08810 Canola nucleus 52.76 46.87
CDY70396 Canola mitochondrion 29.75 46.41
CDY14552 Canola nucleus 51.84 46.05
CDX68037 Canola nucleus 52.15 45.82
CDX85782 Canola nucleus 50.61 45.58
CDY41495 Canola nucleus 51.53 45.53
CDX69866 Canola nucleus 50.61 45.33
CDY40074 Canola nucleus 50.31 45.3
Zm00001d043153_P001 Maize nucleus 58.28 45.02
CDX95999 Canola nucleus 61.04 45.02
CDY38608 Canola nucleus 61.04 45.02
CDY33975 Canola nucleus 50.92 44.86
CDY37811 Canola nucleus 50.92 44.86
CDY38843 Canola nucleus 50.61 44.59
CDY21625 Canola nucleus 49.69 44.51
CDY38253 Canola nucleus 52.15 44.16
Zm00001d012553_P003 Maize nucleus 61.66 42.77
CDY18683 Canola cytosol 48.47 42.47
CDX81273 Canola nucleus 50.31 42.16
CDY70714 Canola nucleus 45.4 42.05
CDY22689 Canola nucleus 54.6 41.59
CDY21336 Canola nucleus 52.15 40.67
CDX88399 Canola nucleus 53.37 40.47
CDY70235 Canola nucleus 44.79 40.11
CDX87494 Canola nucleus 53.99 39.64
CDX70061 Canola nucleus 54.29 39.25
CDX98963 Canola nucleus 53.99 39.02
HORVU0Hr1G032230.4 Barley nucleus 40.49 37.61
CDX95068 Canola nucleus 54.91 37.45
Os01t0808100-01 Rice nucleus 41.41 37.09
CDX93571 Canola nucleus 54.29 37.03
CDY06309 Canola nucleus 54.91 36.98
CDY00417 Canola mitochondrion 19.02 26.72
CDX79240 Canola nucleus 45.71 26.14
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1MapMan:15.5.4.7.1MapMan:26.8.3.1.2GO:A0A078FLY2UniProt:A0A078FLY2
unigene:Bna.14290EnsemblPlants:CDY14061ProteinID:CDY14061ProteinID:CDY14061.1ncoils:CoilGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00078593001InterPro:IPR004827InterPro:IPR025422PFAM:PF00170PFAM:PF14144ScanProsite:PS00036
PFscan:PS50217PFscan:PS51806PANTHER:PTHR22952PANTHER:PTHR22952:SF244SMART:SM00338SUPFAM:SSF57959
InterPro:TGA_domainUniParc:UPI0004EC697BInterPro:bZIPSEG:seg::
Description
BnaC02g01780DBnaC02g01780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLY2]
Coordinates
chrLK032040:-:235146..238003
Molecular Weight (calculated)
36645.2 Da
IEP (calculated)
9.257
GRAVY (calculated)
-0.735
Length
326 amino acids
Sequence
(BLAST)
001: MGDTSPRTSG STDGDMDQNN LMYDGGHVGE SSDRSKEKMD QKTVRRLAQN REAARKSRLR KKAYVQQLEN SRLKLTQLEQ ELQRARQQGV FISSSGDQAH
101: STTGNGAMAF DAEYRRWQED KNRKMKELSS ALDSHASEPE LRTIVEAVLA HYEELFRIKS NAAKNDVFHL LSGMWKTPAE RCFLWLGGFR SSDLLKLIAS
201: QVEPLTEQQS QDLNNLQESS QQAEDALSQG MDSLQQSLSE TLSSGTLGSS SSGNVANYMG QMAMAMGKLG TLEGFIRQAD NLRLQTYQQM LRKLTTRQSA
301: RALLAIHEYS LRLRALSSLW LARPRE
Best Arabidopsis Sequence Match ( AT5G06960.1 )
(BLAST)
001: MGDTSPRTSV STDGDTDHNN LMFDEGHLGI GASDSSDRSK SKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTAGDG AMAFDVEYRR WQEDKNRQMK ELSSAIDSHA TDSELRIIVD GVIAHYEELY RIKGNAAKSD VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LIASQLEPLT EQQSLDINNL QQSSQQAEDA LSQGMDNLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT YQQMVRLLTT
301: RQSARALLAV HNYTLRLRAL SSLWLARPRE
Arabidopsis Description
TGA5TGA5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIF0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.