CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71533
CDX83567
CDX87494
CDX88399
CDX89967
CDX99745
CDY01192
CDY02426
CDY04185
CDY05010
CDY12369
CDY12734
CDY13595
CDY14061
CDY15245
CDY16196
CDY21336
CDY22374
CDY27125
CDY28961
CDY31094
CDY32177
CDY32466
CDY38253
CDY38843
CDY40977
CDY41495
CDY45004
CDY46437
CDY50732
CDY61016
CDY72572

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64280.1	CDX89967	AT1G02450.1	11442055
AT1G64280.1	CDY15245	AT1G02450.1	11442055
AT1G64280.1	CDY32466	AT1G02450.1	11442055
AT1G64280.1	CDY72572	AT1G02450.1	11442055
AT1G64280.1	CDX89967	AT1G02450.1	15749762
AT1G64280.1	CDY15245	AT1G02450.1	15749762
AT1G64280.1	CDY32466	AT1G02450.1	15749762
AT1G64280.1	CDY72572	AT1G02450.1	15749762
AT1G64280.1	CDY31094	AT1G09415.1	11442055
AT1G64280.1	CDY32177	AT1G09415.1	11442055
AT1G64280.1	CDY31094	AT1G09415.1	15634206
AT1G64280.1	CDY32177	AT1G09415.1	15634206
AT1G64280.1	CDY21336	AT1G22070.1	10659709
AT1G64280.1	CDY38253	AT1G22070.1	10659709
AT1G64280.1	CDY38843	AT1G22070.1	10659709
AT1G64280.1	CDY41495	AT1G22070.1	10659709
AT1G64280.1	CDY21336	AT1G22070.1	10662863
AT1G64280.1	CDY38253	AT1G22070.1	10662863
AT1G64280.1	CDY38843	AT1G22070.1	10662863
AT1G64280.1	CDY41495	AT1G22070.1	10662863
AT1G64280.1	CDY21336	AT1G22070.1	15634206
AT1G64280.1	CDY38253	AT1G22070.1	15634206
AT1G64280.1	CDY38843	AT1G22070.1	15634206
AT1G64280.1	CDY41495	AT1G22070.1	15634206
AT1G64280.1	CDY16196	AT1G26830.1	19490895
AT1G64280.1	CDY45004	AT1G26830.1	19490895
AT1G64280.1	CDY46437	AT1G26830.1	19490895
AT1G64280.1	CDY50732	AT1G26830.1	19490895
AT1G64280.1	CDX87494	AT1G77920.1	10662863
AT1G64280.1	CDX88399	AT1G77920.1	10662863
AT1G64280.1	CDX87494	AT1G77920.1	15634206
AT1G64280.1	CDX88399	AT1G77920.1	15634206
AT1G64280.1	CDX83567	AT3G25882.1	11442055
AT1G64280.1	CDX99745	AT3G25882.1	11442055
AT1G64280.1	CDY04185	AT3G25882.1	11442055
AT1G64280.1	CDY13595	AT3G25882.1	11442055
AT1G64280.1	CDY28961	AT3G25882.1	11442055
AT1G64280.1	CDY40977	AT3G25882.1	11442055
AT1G64280.1	CDX83567	AT3G25882.1	21798944
AT1G64280.1	CDX99745	AT3G25882.1	21798944
AT1G64280.1	CDY04185	AT3G25882.1	21798944
AT1G64280.1	CDY13595	AT3G25882.1	21798944
AT1G64280.1	CDY28961	AT3G25882.1	21798944
AT1G64280.1	CDY40977	AT3G25882.1	21798944
AT1G64280.1	CDY01192	AT4G14110.1	19490895
AT1G64280.1	CDY12369	AT4G14110.1	19490895
AT1G64280.1	CDY12734	AT4G14110.1	19490895
AT1G64280.1	CDY27125	AT4G14110.1	19490895
AT1G64280.1	CDY05010	AT5G06960.1	10659709
AT1G64280.1	CDY14061	AT5G06960.1	10659709
AT1G64280.1	CDY05010	AT5G06960.1	10662863
AT1G64280.1	CDY14061	AT5G06960.1	10662863
AT1G64280.1	CDY05010	AT5G06960.1	12383081
AT1G64280.1	CDY14061	AT5G06960.1	12383081
AT1G64280.1	CDY05010	AT5G06960.1	15634206
AT1G64280.1	CDY14061	AT5G06960.1	15634206
AT1G64280.1	CDX71533	AT5G42970.1	19490895
AT1G64280.1	CDY02426	AT5G42970.1	19490895
AT1G64280.1	CDY22374	AT5G42970.1	19490895
AT1G64280.1	CDY61016	AT5G42970.1	19490895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027690.1-P	Field mustard	cytosol, plastid	97.19	97.19
CDY34413	Canola	cytosol	96.84	97.01
AT1G64280.1	Thale cress	cytosol	75.26	72.34
CDX94376	Canola	cytosol	66.49	62.54
CDX89364	Canola	cytosol	66.32	62.17
CDY50004	Canola	cytosol	64.91	62.08
CDX94371	Canola	cytosol	63.33	59.67
CDX89362	Canola	cytosol	62.46	58.84
VIT_11s0016g01990.t01	Wine grape	cytosol	55.09	53.77
Solyc07g040690.2.1	Tomato	cytosol	53.68	53.12
KRH37416	Soybean	cytosol	50.0	48.97
GSMUA_Achr7P09190_001	Banana	cytosol	49.3	48.87
GSMUA_Achr2P16670_001	Banana	cytosol	50.0	48.8
Os01t0194300-01	Rice	cytosol	47.89	46.91
Zm00001d039469_P001	Maize	cytosol	47.89	46.83
EES00131	Sorghum	cytosol	47.02	45.97
TraesCS3B01G123800.1	Wheat	cytosol	46.49	45.93
TraesCS3D01G107500.1	Wheat	cytosol	46.67	45.86
TraesCS3A01G105400.1	Wheat	cytosol	46.14	45.58
GSMUA_Achr6P00950_001	Banana	nucleus	50.35	45.56
GSMUA_AchrUn_...	Banana	cytosol	45.44	45.04
HORVU3Hr1G019230.6	Barley	cytosol	46.84	44.65
GSMUA_Achr8P05490_001	Banana	cytosol	44.74	43.89
TraesCS7D01G019000.1	Wheat	cytosol, mitochondrion	37.19	43.53
GSMUA_Achr3P25880_001	Banana	cytosol	43.16	43.31
TraesCS4A01G470500.1	Wheat	cytosol	36.67	42.74
TraesCS7A01G021800.1	Wheat	cytosol, plastid	38.6	39.36
CDY39410	Canola	plastid	35.79	37.36
CDX82577	Canola	plastid	35.44	37.27
CDX78955	Canola	plastid	38.42	37.24
CDY26398	Canola	plastid	36.67	37.19
CDX99350	Canola	plastid	37.89	36.73
CDY14314	Canola	nucleus	51.58	34.92
CDY36698	Canola	cytosol	26.67	29.86
CDY30971	Canola	cytosol	20.18	25.27
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	20.18	24.89
CDX76040	Canola	cytosol	12.63	24.74
CDY06130	Canola	cytosol	20.0	24.68
CDX72067	Canola	cytosol	20.0	24.62
CDY35774	Canola	cytosol	12.46	24.4
CDX79940	Canola	cytosol	13.33	23.97
CDY23854	Canola	cytosol	20.18	23.91
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	20.18	23.61
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	20.0	23.41
CDY33841	Canola	cytosol	3.68	21.21
TraesCS7A01G022800.1	Wheat	cytosol	41.05	15.63

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.2	MapMan:26.8.3.1.1	Gene3D:3.30.710.10	UniProt:A0A078GGM2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	EnsemblPlants:CDY25575	ProteinID:CDY25575	ProteinID:CDY25575.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00032836001	InterPro:IPR000210	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	InterPro:NPR1/NIM1-like_C	PFAM:PF00651	PFAM:PF12313	PFscan:PS50088
PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EF3F17	SEG:seg

Description

BnaC09g12000DBnaC09g12000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGM2]

Coordinates

chrLK032176:-:570059..572750

Molecular Weight (calculated)

63332.0 Da

IEP (calculated)

5.928

GRAVY (calculated)

-0.146

Length

570 amino acids

Sequence
(BLAST)

001: MDSFAGFGNS YEFSSTSFFF TAPTDSSILY APTAPDASAL QLLSNSLESV FDSPESFYSD AKLVLSGGRE LSFHRVLLAA RSPFFRNALT TAVVKLELKE
101: IAKDHVVGVD SVVAVLAYIY SGRVKPPPKG VSECADESCC HVSCRPAVDF MVEVLYIASV FEIHELATLY QRHLLDVVDK VVVIEDTLLV LKLSSICGEA
201: CKKLTDKCLE IIVKSDVDLV TLDKSLPQHI VKEIVKFRND LGFEVPELEK HVLNIYKALD SDDVELVKML LTEGHTNLDD AYALHFAVKY CDVKTANDLL
301: DLEIADVNLR NPRGYTVLHV AAMRKEPDLI LSLLTKGSRA SETSLEGRTA LLIAKQVTML AEYNNLAEQC KPSLKGRICV EILEQADKGD PFPWDVSPSL
401: AMADHELKMR LLDLENRVAL AQRLFPTEAQ VAMNIAQVKG TSEFTVSSLD PDYLAGAKRT SPFKILEEHQ SRLKALSKTV ELGKRFFPRC SAVLDQIMDS
501: DDLTQLACGE GDTPEKRLQK KQRYMEIQET VKKAYTEDKE EHGNSSLSAS SSSTSKSKAG KRSKLYHRRR

Best Arabidopsis Sequence Match ( AT1G64280.1 )
(BLAST)

001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR

Arabidopsis Description

NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.