CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY25575
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09415.1	CDY25575	AT1G64280.1	11442055
AT1G09415.1	CDY34413	AT1G64280.1	11442055
AT1G09415.1	CDY25575	AT1G64280.1	15634206
AT1G09415.1	CDY34413	AT1G64280.1	15634206
AT1G09415.1	CDY25575	AT1G64280.1	21798944
AT1G09415.1	CDY34413	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G09415.1	Thale cress	nucleus	79.09	77.68
CDY31094	Canola	cytosol	30.0	37.08

Protein Annotations

MapMan:35.2	GO:A0A078H3V3	UniProt:A0A078H3V3	EnsemblPlants:CDY32177	ProteinID:CDY32177	ProteinID:CDY32177.1
ncoils:Coil	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0010112	EnsemblPlantsGene:GSBRNA2T00051558001
InterPro:NIMIN-1	InterPro:NPR1/NH1-interacting	PFAM:PF15699	PANTHER:PTHR33669	PANTHER:PTHR33669:SF9	UniParc:UPI0004EC8534
SEG:seg	:	:	:	:	:

Description

BnaCnng06860DBnaCnng06860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3V3]

Coordinates

chrLK032288:-:244831..245163

Molecular Weight (calculated)

12976.1 Da

IEP (calculated)

5.380

GRAVY (calculated)

-1.403

Length

110 amino acids

Sequence
(BLAST)

001: MDERDRKKMK MEKQEEEKME KLYTLLKNAR EMRKHVISSM EKKRQEEERA RVHRFPSFQP EDFIFNNEAE ANNNENAAGN ASSSTSNKYG SKEEKEEAET
101: NVCLDLNLSL

Best Arabidopsis Sequence Match ( AT1G09415.1 )
(BLAST)

001: MDRDRKRVKM EKEDDEEEKM EKLYTVLKNA REMRKYVNSS MEKKRQEEEE RARVRRFPSF QPEDFIFMNK AEANNIEKAA NESSSASNEY DGSKEKQEGS
101: ETNVCLDLNL SL

Arabidopsis Description

NIMIN-3Protein NIM1-INTERACTING 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.