CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY25575
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09415.1	CDY25575	AT1G64280.1	11442055
AT1G09415.1	CDY34413	AT1G64280.1	11442055
AT1G09415.1	CDY25575	AT1G64280.1	15634206
AT1G09415.1	CDY34413	AT1G64280.1	15634206
AT1G09415.1	CDY25575	AT1G64280.1	21798944
AT1G09415.1	CDY34413	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32177	Canola	cytosol, mitochondrion, nucleus	37.08	30.0
AT1G09415.1	Thale cress	nucleus	31.46	25.0

Protein Annotations

EnsemblPlants:CDY31094	EnsemblPlantsGene:GSBRNA2T00047175001	ProteinID:CDY31094	ProteinID:CDY31094.1	SEG:seg	UniParc:UPI0004EDC562
UniProt:A0A078H115	MapMan:35.2	:	:	:	:

Description

BnaA08g26440DBnaA08g26440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H115]

Coordinates

chrLK032267:+:212228..213396

Molecular Weight (calculated)

10015.8 Da

IEP (calculated)

5.112

GRAVY (calculated)

-0.612

Length

89 amino acids

Sequence
(BLAST)

1: MYDMLLYELL KTCLKPPMPE DFIFKNESEA NNNENAAGNA SSSASNKQWR SQKIFYGSKE EKEIAETNVC LDLNLSLSLT SGKKCSSIR

Best Arabidopsis Sequence Match ( AT1G09415.1 )
(BLAST)

001: MDRDRKRVKM EKEDDEEEKM EKLYTVLKNA REMRKYVNSS MEKKRQEEEE RARVRRFPSF QPEDFIFMNK AEANNIEKAA NESSSASNEY DGSKEKQEGS
101: ETNVCLDLNL SL

Arabidopsis Description

NIMIN-3Protein NIM1-INTERACTING 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.