CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93514
CDX94988
CDY04768
CDY21400
CDY25575
CDY25761
CDY31102
CDY32165
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25882.1	CDX93514	AT1G09270.1	21798944
AT3G25882.1	CDX94988	AT1G09270.1	21798944
AT3G25882.1	CDY31102	AT1G09270.1	21798944
AT3G25882.1	CDY32165	AT1G09270.1	21798944
AT3G25882.1	CDY04768	AT1G22920.1	21798944
AT3G25882.1	CDY21400	AT1G22920.1	21798944
AT3G25882.1	CDY25761	AT1G22920.1	21798944
AT3G25882.1	CDY25575	AT1G64280.1	11442055
AT3G25882.1	CDY34413	AT1G64280.1	11442055
AT3G25882.1	CDY25575	AT1G64280.1	21798944
AT3G25882.1	CDY34413	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13595	Canola	cytosol	94.77	94.77
CDY40977	Canola	nucleus	51.74	76.72
CDY04185	Canola	nucleus	52.33	74.38
CDY28961	Canola	nucleus	51.74	73.55
AT3G25882.1	Thale cress	nucleus	51.16	72.13
CDX99745	Canola	nucleus	37.21	68.09

Protein Annotations

EnsemblPlants:CDX83567	EnsemblPlantsGene:GSBRNA2T00139219001	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607
GO:GO:0010112	InterPro:NIMIN-2	PANTHER:PTHR35735	PANTHER:PTHR35735:SF1	ProteinID:CDX83567	ProteinID:CDX83567.1
SEG:seg	UniParc:UPI0004EF21D2	MapMan:35.1	:	:	:

Description

BnaC07g23070D

Coordinates

chrLK031833:-:724031..724622

Molecular Weight (calculated)

19521.2 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.731

Length

172 amino acids

Sequence
(BLAST)

001: MTSLYSKVHL KAHVMELMLQ RLNDDVIINL HHPFYLAVDD IDRSKSTPTS YKKTNMSSEK KVERREEDNG DGHIGNSSME VVRTVTEEEV DEFFKILRRV
101: HVATRTVTRA NGGIETRELT SKKRKRSQRL GLRSSLDSNG VRDGELEGID RVGLRNSGLD LNCKPEPDAV SL

Best Arabidopsis Sequence Match ( AT3G25882.1 )
(BLAST)

001: MNNSLKKEER VEEDNGKSDG NRGKPSTEVV RTVTEEEVDE FFKILRRVHV ATRTVAKVNG GVAEGELPSK KRKRSQNLGL RNSLDCNGVR DGEFDEINRV
101: GLQGLGLDLN CKPEPDSVSL SL

Arabidopsis Description

NIMIN-2NIMIN-2 [Source:UniProtKB/TrEMBL;Acc:A0A178VAB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.