Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017343.1-P | Field mustard | nucleus | 99.17 | 99.17 |
| CDY28961 | Canola | nucleus | 99.17 | 99.17 |
| AT3G25882.1 | Thale cress | nucleus | 75.21 | 74.59 |
| CDY40977 | Canola | nucleus | 70.25 | 73.28 |
| CDX99745 | Canola | nucleus | 49.59 | 63.83 |
| CDY13595 | Canola | cytosol | 76.03 | 53.49 |
| CDX83567 | Canola | nucleus | 74.38 | 52.33 |
Protein Annotations
| EnsemblPlants:CDY04185 | EnsemblPlantsGene:GSBRNA2T00117885001 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0010112 | InterPro:NIMIN-2 | PANTHER:PTHR35735 | PANTHER:PTHR35735:SF1 | ProteinID:CDY04185 | ProteinID:CDY04185.1 |
| SEG:seg | UniParc:UPI0004EE99C4 | MapMan:35.1 | : | : | : |
Description
BnaA09g19630D
Coordinates
chrLK031949:-:1074709..1075350
Molecular Weight (calculated)
13680.0 Da
IEP (calculated)
5.103
GRAVY (calculated)
-0.984
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSEMKEERR EEDNGKACGD EYRGKSSTEV VRTVTEEEVD EFFKILRRLH VATRTVARVN GGDAERELPS KKRKRIQSLG LRSSLDTNEV QDGESDGINR
101: VGLRNLGLDL NCQPEPEAVK M
101: VGLRNLGLDL NCQPEPEAVK M
001: MNNSLKKEER VEEDNGKSDG NRGKPSTEVV RTVTEEEVDE FFKILRRVHV ATRTVAKVNG GVAEGELPSK KRKRSQNLGL RNSLDCNGVR DGEFDEINRV
101: GLQGLGLDLN CKPEPDSVSL SL
101: GLQGLGLDLN CKPEPDSVSL SL
Arabidopsis Description
NIMIN-2NIMIN-2 [Source:UniProtKB/TrEMBL;Acc:A0A178VAB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.