CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93514
CDX94988
CDY04768
CDY21400
CDY25575
CDY25761
CDY31102
CDY32165
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25882.1	CDX93514	AT1G09270.1	21798944
AT3G25882.1	CDX94988	AT1G09270.1	21798944
AT3G25882.1	CDY31102	AT1G09270.1	21798944
AT3G25882.1	CDY32165	AT1G09270.1	21798944
AT3G25882.1	CDY04768	AT1G22920.1	21798944
AT3G25882.1	CDY21400	AT1G22920.1	21798944
AT3G25882.1	CDY25761	AT1G22920.1	21798944
AT3G25882.1	CDY25575	AT1G64280.1	11442055
AT3G25882.1	CDY34413	AT1G64280.1	11442055
AT3G25882.1	CDY25575	AT1G64280.1	21798944
AT3G25882.1	CDY34413	AT1G64280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025169.1-P	Field mustard	cytosol	99.42	99.42
CDX83567	Canola	nucleus	94.77	94.77
CDY40977	Canola	nucleus	52.33	77.59
CDY04185	Canola	nucleus	53.49	76.03
CDY28961	Canola	nucleus	52.91	75.21
AT3G25882.1	Thale cress	nucleus	52.33	73.77
CDX99745	Canola	nucleus	37.21	68.09

Protein Annotations

EnsemblPlants:CDY13595	EnsemblPlantsGene:GSBRNA2T00078004001	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607
GO:GO:0010112	InterPro:NIMIN-2	PANTHER:PTHR35735	PANTHER:PTHR35735:SF1	ProteinID:CDY13595	ProteinID:CDY13595.1
SEG:seg	UniParc:UPI0004EF373A	UniProt:A0A078FGP6	MapMan:35.1	:	:

Description

BnaA06g33280DBnaA06g33280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGP6]

Coordinates

chrLK032037:-:172116..172770

Molecular Weight (calculated)

19438.2 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.669

Length

172 amino acids

Sequence
(BLAST)

001: MTCLYSKVHL KAHVTELMLQ RLNDDVIINL HHPFNLAVDD IDRSKSTPTS YKKANMSSEK KVERREEDNG DGHIGKSSME VVRTVTEEEV DEFFKILRRV
101: HVAIRTVTRA NGGIVERELT SKKRKRSQRL GLRSSLDSNG VRDGELDGID RVGLRNSGLD LNCKPEPDAV SL

Best Arabidopsis Sequence Match ( AT3G25882.1 )
(BLAST)

001: MNNSLKKEER VEEDNGKSDG NRGKPSTEVV RTVTEEEVDE FFKILRRVHV ATRTVAKVNG GVAEGELPSK KRKRSQNLGL RNSLDCNGVR DGEFDEINRV
101: GLQGLGLDLN CKPEPDSVSL SL

Arabidopsis Description

NIMIN-2NIMIN-2 [Source:UniProtKB/TrEMBL;Acc:A0A178VAB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.