CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018570.1-P	Field mustard	cytosol	99.82	99.82
CDX94988	Canola	cytosol	99.45	99.81
CDY32165	Canola	cytosol	96.86	96.86
CDY31102	Canola	plasma membrane	96.86	96.86
AT1G09270.1	Thale cress	cytosol	92.44	93.12
VIT_14s0060g00930.t01	Wine grape	cytosol	82.66	83.74
PGSC0003DMT400007130	Potato	cytosol	82.47	83.71
Solyc01g100720.2.1	Tomato	nucleus	82.1	83.33
CDY52043	Canola	cytosol	73.8	74.91
CDY22779	Canola	cytosol	73.62	74.72
CDY09716	Canola	cytosol	73.62	74.58
CDX90544	Canola	cytosol	73.62	73.89
CDY34430	Canola	cytosol	72.14	73.77
CDY32215	Canola	cytosol	72.14	73.77
GSMUA_Achr8P22290_001	Banana	cytosol	72.69	71.51
CDY01921	Canola	cytosol	63.65	64.97
CDX97257	Canola	cytosol	63.47	64.78
CDY64806	Canola	cytosol	60.15	62.93
CDX90948	Canola	cytosol	59.59	62.36
CDX89948	Canola	cytosol	59.78	62.19
CDY33917	Canola	cytosol	58.3	59.4
CDY05638	Canola	cytosol	58.3	59.29
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.37	58.01
KRG96699	Soybean	cytosol	50.92	57.02
KRG99893	Soybean	cytosol	44.28	54.79
KRH68429	Soybean	cytosol, plastid	52.4	54.41
KRG99898	Soybean	cytosol	43.91	53.97
CDY05194	Canola	cytosol	53.14	53.63
KRG99895	Soybean	cytosol, plastid	48.16	53.37
KRG99853	Soybean	cytosol, plastid	48.16	53.37
CDY27746	Canola	cytosol	53.32	53.32
Os07t0688300-01	Rice	cytosol	42.07	49.35
HORVU2Hr1G016300.1	Barley	cytosol	41.51	49.34
KRG99088	Soybean	cytosol	39.48	48.09
KRG96700	Soybean	cytosol	44.1	47.14
TraesCS2D01G096200.1	Wheat	cytosol	46.68	44.86
KXG36990	Sorghum	cytosol	46.31	44.58
TraesCS2A01G097100.1	Wheat	cytosol	46.31	44.58
TraesCS2B01G112400.2	Wheat	cytosol	46.31	44.5
Zm00001d022536_P008	Maize	cytosol	45.02	42.96
CDY15260	Canola	cytosol	60.15	42.06
CDX70330	Canola	cytosol, extracellular	14.58	30.27
CDY04878	Canola	plastid	28.6	29.75
CDY55698	Canola	cytosol, plastid	28.41	29.62
CDY10407	Canola	cytosol	26.2	28.74

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078DYN6	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	EnsemblPlants:CDX93514	ProteinID:CDX93514	ProteinID:CDX93514.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565
GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00156184001	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975
InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF53	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0001D64F97	SEG:seg	:	:	:

Description

BnaA06g05340D

Coordinates

chrLK031876:-:498241..501228

Molecular Weight (calculated)

59772.5 Da

IEP (calculated)

4.922

GRAVY (calculated)

-0.258

Length

542 amino acids

Sequence
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQQQ PLGAAGLDAL QSAAAVEKRL EGIPMMVQGV YSEDPQAQLE
101: ATTQFRKLLS IERSPPIDEV IKAGVIPRFV EFLRRQDHPQ LQFEAAWALT NVASGTSDHT RVVIEHGAVP IFVELLSSAS DDVREQAVWA LGNVAGDSPN
201: CRNLVLSCGA LAPLLSQLNE NSKLSMLRNA TWTLSNFCRG KPPTPFEEVK PALPVLRQLI YLNDEEVLTD ACWALSYLSD GPNDKIQAVI QAGVCPRLVE
301: LLSHPSPTVL IPALRTVGNI VTGDDSQTQF IIDSGVLPHL YNLLTQNHKK SIKKEACWTI SNITAGNKVQ IEAVVGAGIV LPLVHLLQNA EFDIKKEAAW
401: AISNATSGGS HEQIQYLVAQ GCIKPLCDLL ICPDPRIVTV CLEGLENILK IGEADKEMGL NGGVNLYAQI VEESDGLDKI ENLQSHDNNE IYEKAVKILE
501: RYWAEEEEDE QILPDGVNEN PQQGFSFGNN QTAAPPGGFK FG

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.