CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033342.1-P	Field mustard	cytosol	99.81	99.81
AT1G02690.2	Thale cress	cytosol	76.01	73.47
VIT_07s0005g01100.t01	Wine grape	cytosol	70.25	69.19
CDY01921	Canola	cytosol	69.29	67.98
CDX97257	Canola	cytosol	69.1	67.8
TraesCS3D01G178500.1	Wheat	cytosol	67.95	67.56
TraesCS3A01G172000.1	Wheat	golgi, nucleus	67.95	67.56
Solyc06g009750.2.1	Tomato	nucleus	67.95	67.17
PGSC0003DMT400018802	Potato	cytosol	67.75	66.98
CDY32215	Canola	cytosol	67.75	66.6
Os01t0253300-01	Rice	cytosol	67.18	66.54
HORVU3Hr1G034750.5	Barley	cytosol	67.95	66.42
CDY34430	Canola	cytosol	67.56	66.42
CDY09716	Canola	cytosol	68.14	66.36
KXG32187	Sorghum	cytosol	67.18	66.29
CDX90544	Canola	cytosol	67.95	65.56
CDY22779	Canola	cytosol	67.18	65.54
Zm00001d040274_P001	Maize	cytosol	66.41	65.41
CDY52043	Canola	cytosol	66.99	65.36
Zm00001d008345_P003	Maize	cytosol	66.41	65.28
TraesCS3B01G202800.2	Wheat	cytosol	66.6	64.62
CDY64806	Canola	cytosol	63.72	64.09
CDX90948	Canola	cytosol	63.34	63.71
CDX94988	Canola	cytosol	62.38	60.19
CDY15260	Canola	cytosol	89.44	60.13
CDX93514	Canola	cytosol	62.19	59.78
CDY31102	Canola	plasma membrane	61.8	59.41
CDY32165	Canola	cytosol	61.42	59.04
CDY33917	Canola	cytosol	56.05	54.89
CDY05638	Canola	cytosol	56.05	54.78
CDY05194	Canola	cytosol	50.67	49.16
CDY27746	Canola	cytosol	50.48	48.52
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.78	42.54
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	6.14	35.96
CDY04878	Canola	plastid	28.6	28.6
CDY55698	Canola	cytosol, plastid	28.41	28.46
CDY10407	Canola	cytosol	25.14	26.52
CDX70330	Canola	cytosol, extracellular	12.28	24.52

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078DRU9	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	EnsemblPlants:CDX89948	ProteinID:CDX89948	ProteinID:CDX89948.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565
GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00150433001	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975
InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF53	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0004EEF07D	SEG:seg	:	:	:

Description

BnaA10g01340D

Coordinates

chrLK031861:-:872983..875646

Molecular Weight (calculated)

57800.9 Da

IEP (calculated)

5.265

GRAVY (calculated)

-0.257

Length

521 amino acids

Sequence
(BLAST)

001: MSLKPSARTE VRRNMYKVSV DADEGRRRRE GDMVEIRKNK REENLQKKRR EGLTAPIAQQ GHDLYSYERL EKITQLAAGA TSEDRSLQLE ATIGIRKLLS
101: VERNPPINEV IQSGVVPRLV QFLSVDFFEL QFEAAWALTN IASGTSDNTK VIIDSGAIPD FVRLFASKSD EVREQSVWAV GNVAGDSPKC RDFVLSCEAM
201: MPLLAQFNEH TKPSMLRNAA WTLSNFCRGK PAPALKQTKP ALPVLERLLH SNDDEVLTDA CWTLSYLSDG TNDRIQTVIN AGVIPSLVSL LAHHLPSVLI
301: PAIRAIGNIV TGDDMMTQEV LNHQALPHLL SILTRTYKRS IKKEACWAIS NITAGNTSQI QQVIEAGIIQ PLIYMLHTAE FEIKREAVWA VSNLTSGGNH
401: DQIKFLVDQG CIKPLCDLLT CPDPLTVTVI LEALENILKV GEAEMNQGNT GGFNIYVQMI DDAEGLEKIE NLQRHNNNEI YEKAVQILSS YWTDEDGNEH
501: DNGFAFGNQS GNASTGGFNF G

Best Arabidopsis Sequence Match ( AT1G02690.1 )
(BLAST)

001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQTKAALPA LERLLHSTDE EVLTDASWAL SYLSDGTNEK IQTVIDAGVI PRLVQLLAHP
301: SPSVLIPALR TIGNIVTGDD IQTQAVISSQ ALPGLLNLLK NTYKKSIKKE ACWTISNITA GNTSQIQEVF QAGIIRPLIN LLEIGEFEIK KEAVWAISNA
401: TSGGNHDQIK FLVSQGCIRP LCDLLPCPDP RVVTVTLEGL ENILKVGEAE KNLGNTGNDN LYAQMIEDAD GLDKIENLQS HDNNEIYEKA VKILESYWAA
501: DDEEEDIGGV DAPENVQSSG FQFGNQSGNA PTGGFNFG

Arabidopsis Description

IMPA-6Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:F4HXL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.