CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92997
EER93970
EER98550
EES04638
EES05120
EES06474
EES12026
EES12270
EES12338
EES12557
EES14795
KXG23990
KXG25821
KXG26277
KXG29764
KXG31130
KXG33191
OQU90613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02150.1	KXG33191	AT1G06510.1	21798944
AT4G02150.1	EES06474	AT1G52560.1	21798944
AT4G02150.1	EER98550	AT2G23290.1	21798944
AT4G02150.1	EES04638	AT2G24020.1	21798944
AT4G02150.1	EER92997	AT2G45820.1	21798944
AT4G02150.1	EER93970	AT2G45820.1	21798944
AT4G02150.1	EES12557	AT2G45820.1	21798944
AT4G02150.1	KXG31130	AT2G45820.1	21798944
AT4G02150.1	EES14795	AT3G21215.1	21798944
AT4G02150.1	EES05120	AT3G48550.1	21798944
AT4G02150.1	EES12026	AT3G48550.1	21798944
AT4G02150.1	KXG25821	AT4G15900.1	9765207
AT4G02150.1	EES12270	AT4G22240.1	21798944
AT4G02150.1	OQU90613	AT4G24840.1	21798944
AT4G02150.1	KXG29764	AT5G19960.1	21798944
AT4G02150.1	EES12338	AT5G47810.1	21798944
AT4G02150.1	KXG26277	AT5G47810.1	21798944
AT4G02150.1	KXG23990	AT5G57120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040274_P001	Maize	cytosol	95.08	94.9
Zm00001d008345_P003	Maize	cytosol	95.08	94.72
TraesCS3D01G178500.1	Wheat	cytosol	89.2	89.89
TraesCS3A01G172000.1	Wheat	golgi, nucleus	89.2	89.89
Os01t0253300-01	Rice	cytosol	89.02	89.35
HORVU3Hr1G034750.5	Barley	cytosol	89.2	88.37
TraesCS3B01G202800.2	Wheat	cytosol	84.47	83.05
VIT_07s0005g01100.t01	Wine grape	cytosol	82.01	81.85
PGSC0003DMT400076860	Potato	cytosol	81.82	81.66
PGSC0003DMT400018802	Potato	cytosol	78.79	78.94
Solyc06g009750.2.1	Tomato	nucleus	78.6	78.75
EES19061	Sorghum	cytosol	78.79	78.49
Solyc08g041890.2.1	Tomato	nucleus	81.44	74.52
AT4G02150.1	Thale cress	cytosol	71.21	70.81
AT1G02690.2	Thale cress	cytosol	71.4	69.94
CDY01921	Canola	cytosol	70.27	69.87
CDX97257	Canola	cytosol	69.7	69.3
Bra008559.1-P	Field mustard	cytosol	69.7	69.3
Bra033342.1-P	Field mustard	cytosol	66.48	67.37
CDX89948	Canola	cytosol	66.29	67.18
CDY64806	Canola	cytosol	65.72	66.99
CDX90948	Canola	cytosol	64.96	66.22
Bra000891.1-P	Field mustard	cytosol	64.77	66.02
KXG32452	Sorghum	cytosol	39.77	55.41
CDY15260	Canola	cytosol	66.48	45.29
KXG36990	Sorghum	cytosol	46.97	44.05
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	6.82	40.45
EES02429	Sorghum	plastid	28.6	26.73

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	UniProt:A0A1B6Q2M6	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606
GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha
EnsemblPlants:KXG32187	ProteinID:KXG32187	ProteinID:KXG32187.1	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185
EnsemblPlantsGene:SORBI_3003G115100	SUPFAM:SSF48371	UniParc:UPI0001C80A1C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:10383222..10388174

Molecular Weight (calculated)

58082.5 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.235

Length

528 amino acids

Sequence
(BLAST)

001: MSLRPSERVE VRRNRYKVAV DAEEGRRRRE DNMVEIRKNR REESLLKRRR EGLQAQFPAP PSGVEKKLES LPAMVSGVYS DDNNLQLDAT TQFRKLLSIE
101: RSPPIEEVIK SGVVPRFVQF LTREDFPQLQ FEAAWALTNI ASGTSENTKV VIDHGAVPIF VKLLGSASDD VREQAVWALG NVAGDSPKCR DLVLANGALM
201: PLLAQLNEHA KLSMLRNATW TLSNFCRGKP QPSFDQTKPA LPALARLIHS NDEEVLTDAC WALSYLSDGT NDKIQAVIEA GVCPRLVELL LHPSPSVLIP
301: ALRTVGNIVT GDDMQTQCII DHQALPRLLN LLTQNHKKSI KKEACWTISN ITAGNKDQIQ AVISAGIIAP LLQLLQTAEF DIKKEAAWAI SNATSGGSHE
401: QIKYLVAEGC IKPLCDLLVC PDPRIVTVCL EGLENILKVG EYDKNMGGAT ADGNLFAQMI DEAEGLEKIE NLQSHDINEI YEKAVKLLEA YWMEEEDDTM
501: ATAAEAGPTV FDFSQGGNPP AGGGLNFN

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.