CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11384
EES12270
EES14755
EES18176
EES18483
KXG27470
OQU80698
OQU84894
OQU85994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	EES18176	AT1G18040.1	21798944
AT4G04020.1	EES11384	AT2G24570.1	21798944
AT4G04020.1	EES14755	AT2G24570.1	21798944
AT4G04020.1	OQU84894	AT2G24570.1	21798944
AT4G04020.1	EES12270	AT4G04020.1	21798944
AT4G04020.1	EES18483	AT4G21070.1	16957774
AT4G04020.1	EES12270	AT4G22240.1	24937144
AT4G04020.1	OQU80698	AT5G22890.1	21798944
AT4G22240.1	KXG27470	AT3G61310.1	21798944
AT4G22240.1	OQU85994	AT3G61310.1	21798944
AT4G22240.1	EES12270	AT4G04020.1	24937144
AT4G22240.1	EES12270	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003470_P001	Maize	plastid	85.15	88.36
Os09t0133600-01	Rice	plastid	73.03	75.55
TraesCS5B01G162100.1	Wheat	plastid	68.79	72.76
GSMUA_Achr7P05510_001	Banana	cytosol	54.85	72.69
TraesCS5A01G164600.1	Wheat	plastid	68.48	71.97
CDY71809	Canola	plastid	36.36	63.83
KRH36517	Soybean	plastid	57.88	61.22
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	68.18	60.32
GSMUA_Achr3P12980_001	Banana	plastid	58.18	60.0
KRH11500	Soybean	plastid	55.45	59.8
PGSC0003DMT400043112	Potato	extracellular	57.88	58.59
Solyc02g081170.2.1	Tomato	plastid	57.58	58.28
Bra013602.1-P	Field mustard	plastid	54.24	56.11
CDX82925	Canola	plastid	53.64	55.84
CDX79139	Canola	plastid	53.94	55.8
GSMUA_Achr4P20110_001	Banana	plastid	52.42	55.45
CDY16684	Canola	plastid	52.73	54.72
Bra029481.1-P	Field mustard	plastid	52.73	54.72
CDX90850	Canola	plastid	52.12	54.43
AT4G22240.1	Thale cress	plastid	50.91	54.19
CDY21291	Canola	plastid	51.21	53.48
AT4G04020.1	Thale cress	plastid	51.52	53.46
Bra000785.1-P	Field mustard	plastid	51.52	51.99
CDX94540	Canola	plastid	17.58	38.93
EER94440	Sorghum	plastid	39.09	33.86

Protein Annotations

EnsemblPlants:EES12270	EnsemblPlantsGene:SORBI_3006G102000	EntrezGene:8073406	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7
PFAM:PF04755	ProteinID:EES12270	ProteinID:EES12270.1	RefSeq:XP_002447942.1	SEG:seg	unigene:Sbi.17854
UniParc:UPI0001A872AB	UniProt:C5Y9P8	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:47235305..47238762

Molecular Weight (calculated)

35266.8 Da

IEP (calculated)

4.720

GRAVY (calculated)

-0.165

Length

330 amino acids

Sequence
(BLAST)

001: MAGSAFLNAL VLRAPSPSPS LSCSSSSTRR SAGAFAFPNP PRLPSLRSAR RVVLARAAAA PPGAGGDPEP EDDEWGPEPE GGSAVTGATA VAEAPEAPEA
101: REVAELKAQL KDALYGTERG LRASSESRAK VLELITQLET RNPTPAPTEA LTLLNGKWIL AYTSFSQLFP LLGFGNLPEL VKVEEISQTI DSENFTVQNC
201: IKFSGPLATT SVATNAKFEI RSPKRVQIKF EEGIVGTPQL TDSIVLPEKF ELFGQNIDLS PLKGIFTSIE NAASSVAKTI SDQPPLKIPI RTNNAESWLL
301: TTYLDEELRI SRGDGSSIFV LFKEGSTLLN

Best Arabidopsis Sequence Match ( AT4G22240.1 )
(BLAST)

001: MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG
101: LSASSETRAE IGDLITQLES KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLSRGIVPLI KVDEISQTID SDNFTVQNSV RFAGPLGTNS ISTNAKFEIR
201: SPKRVQIKFE QGVIGTPQLT DSIEIPEYVE VLGQKIDLNP IRGLLTSVQD TASSVARTIS SQPPLKFSLP ADNAQSWLLT TYLDKDIRIS RGDGGSVFVL
301: IKEGSPLLNP

Arabidopsis Description

PAP2Probable plastid-lipid-associated protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.