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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 9
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d030074_P001 Maize plastid 91.6 91.36
Os10t0575700-00 Rice plastid 68.24 69.52
PGSC0003DMT400008946 Potato plastid 29.13 64.16
TraesCS1A01G193500.1 Wheat plastid 60.37 63.89
TraesCS1D01G197400.1 Wheat plastid 59.84 63.33
TraesCS1B01G208500.1 Wheat plastid 59.84 63.33
HORVU1Hr1G050640.1 Barley cytosol 60.1 58.27
Bra005337.1-P Field mustard plastid 51.44 54.44
CDY31692 Canola plastid 51.44 54.44
CDX84202 Canola plastid 50.39 53.04
GSMUA_Achr6P01070_001 Banana plastid 52.76 52.34
Solyc08g076480.2.1 Tomato plastid 45.93 50.87
AT2G35490.1 Thale cress plastid 49.34 50.0
KRH74371 Soybean nucleus, plastid 48.03 49.46
VIT_02s0012g02050.t01 Wine grape plastid 49.34 49.21
PGSC0003DMT400038350 Potato cytosol 45.93 42.58
PGSC0003DMT400054304 Potato plastid 46.72 41.88
Solyc08g005220.2.1 Tomato plastid 45.41 41.39
EES12270 Sorghum plastid 33.86 39.09
GSMUA_Achr2P09810_001 Banana plastid 20.47 29.32
Protein Annotations
MapMan:35.1EntrezGene:8055139UniProt:C5WQR6EnsemblPlants:EER94440ProteinID:EER94440ProteinID:EER94440.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0010287GO:GO:0016020InterPro:PAP/fibrillin_dom
PFAM:PF04755PANTHER:PTHR31906PANTHER:PTHR31906:SF5EnsemblPlantsGene:SORBI_3001G286600unigene:Sbi.13224UniParc:UPI0001A82E50
RefSeq:XP_002467442.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:-:56161262..56163917
Molecular Weight (calculated)
40476.4 Da
IEP (calculated)
4.282
GRAVY (calculated)
-0.312
Length
381 amino acids
Sequence
(BLAST)
001: MAPIFAAASH ASLLPLSHVD RPAAGRLVRG TLRPHTSGLR LRRPPGATGR GRGRGRGGIP DEWGERSPPG APEAPAQPDP LIDDEDDSAD GNSRPIVVDE
101: WGEPGAPEPE PPSAADPPSP AADDEWEEEP EASVPDPTPA PAAAEEDEQA VKREELKRCL VDTVYGSDLG FRASTEVRGE VVELVTQLEA ANPTTAPVET
201: SDLLDGNWIL IYTAYSELLP ILAAGATPLV KVKQISQEID SKSMTIVNAS TLTTPFASFS FSATASFEVQ SPSRIEVQFK EGSFQPPVIS SSVDLPQQID
301: IFGQKISLGP VQQALNPLQQ AFASIAGSIS GQPPLKVPIP GNNRARSWLL TTYLDKDLRI SRGDGGLFIL AKEGSPLLDL L
Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)
001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL
Arabidopsis Description
PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.