Factsheet for PGSC0003DMT400038350

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008946	Potato	plastid	34.55	82.08
Solyc08g076480.2.1	Tomato	plastid	67.64	80.81
KRH74371	Soybean	nucleus, plastid	48.18	53.51
Bra005337.1-P	Field mustard	plastid	45.99	52.5
CDY31692	Canola	plastid	45.74	52.22
CDX84202	Canola	plastid	45.74	51.93
PGSC0003DMT400054304	Potato	plastid	52.55	50.82
VIT_02s0012g02050.t01	Wine grape	plastid	45.74	49.21
AT2G35490.1	Thale cress	plastid	45.01	49.2
Os10t0575700-00	Rice	plastid	44.77	49.2
GSMUA_Achr6P01070_001	Banana	plastid	43.8	46.88
EER94440	Sorghum	plastid	42.58	45.93
TraesCS1A01G193500.1	Wheat	plastid	40.15	45.83
TraesCS1D01G197400.1	Wheat	plastid	39.9	45.56
Zm00001d030074_P001	Maize	plastid	42.34	45.55
TraesCS1B01G208500.1	Wheat	plastid	39.66	45.28
HORVU1Hr1G050640.1	Barley	cytosol	40.88	42.75
PGSC0003DMT400043112	Potato	extracellular	32.36	40.8
GSMUA_Achr2P09810_001	Banana	plastid	19.46	30.08

Protein Annotations

EnsemblPlants:PGSC0003DMT400038350	EnsemblPlantsGene:PGSC0003DMG402014796	EntrezGene:102582412	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF5
PFAM:PF04755	PGSC:PGSC0003DMG402014796	RefSeq:XP_006352897.1	SEG:seg	UniParc:UPI000294FE70	UniProt:M1B6P7
MapMan:35.1	:	:	:	:	:

Description

Plastid lipid-associated protein 3, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG402014796]

Coordinates

chr8:+:49127429..49131551

Molecular Weight (calculated)

44849.1 Da

IEP (calculated)

4.754

GRAVY (calculated)

-0.331

Length

411 amino acids

Sequence
(BLAST)

001: MTCVPPDNKN YTNFVKENLI QNKVKRAKSI STIYITAGLK SQSTTTASAA ISTVSPPQDV HFQKQLNMST LYNPLIFTIK NPKVTLKPHT SLPSSVPTSR
101: LRKFPNFSVQ SSISSSNDPE KPTFITPDND KADDKTVEFV DEWGEKSEPE PGPVTKLADS DPPKYEDEWG NGSPGVDGSV GEDEKLLELK RCLVDTVYGT
201: DFGFRASSEI RAEALEFVSQ LEAANPTPAP TESPELLDGN WLLVFTAFSE LLPLLAVGNI PLLKVEKISQ DVNTNSLTIE NATTLSSPVA TLSFSATATF
301: EVRSPSRIQV EFKEGNFKPP EIKSNIDLPE TVDLFGQKIS LSPVQQSLGP LENAVAGIAR TISGQPPLKI PIPGERTKSW LLTTYLDKDM RISRGDGGLF
401: VLVKEGSSLL Y

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.