CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 1
plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008946	Potato	plastid	32.7	69.94
Solyc08g076480.2.1	Tomato	plastid	51.62	55.52
CDX84202	Canola	plastid	52.43	53.59
Bra005337.1-P	Field mustard	plastid	51.62	53.06
CDY31692	Canola	plastid	51.35	52.78
VIT_02s0012g02050.t01	Wine grape	plastid	53.51	51.83
TraesCS1A01G193500.1	Wheat	plastid	49.73	51.11
TraesCS1D01G197400.1	Wheat	plastid	49.46	50.83
AT2G35490.1	Thale cress	plastid	51.35	50.53
TraesCS1B01G208500.1	Wheat	plastid	48.92	50.28
Os10t0575700-00	Rice	plastid	50.0	49.47
PGSC0003DMT400038350	Potato	cytosol	53.51	48.18
EER94440	Sorghum	plastid	49.46	48.03
Zm00001d030074_P001	Maize	plastid	49.46	47.91
HORVU1Hr1G050640.1	Barley	cytosol	48.92	46.06
GSMUA_Achr6P01070_001	Banana	plastid	47.57	45.83
Solyc08g005220.2.1	Tomato	plastid	51.35	45.45
PGSC0003DMT400054304	Potato	plastid	51.89	45.18
KRH36517	Soybean	plastid	35.41	41.99
KRH11500	Soybean	plastid	32.16	38.89
GSMUA_Achr2P09810_001	Banana	plastid	22.16	30.83

Protein Annotations

EntrezGene:100803742	MapMan:35.1	EMBL:ACUP02000021	EnsemblPlantsGene:GLYMA_01G015100	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0010287	GO:GO:0016020	UniProt:I1J4S3	EnsemblPlants:KRH74371	ProteinID:KRH74371
ProteinID:KRH74371.1	InterPro:PAP/fibrillin_dom	PFAM:PF04755	PANTHER:PTHR31906	PANTHER:PTHR31906:SF5	UniParc:UPI00023375E6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1496846..1500010

Molecular Weight (calculated)

39645.7 Da

IEP (calculated)

4.310

GRAVY (calculated)

-0.234

Length

370 amino acids

Sequence
(BLAST)

001: MVQISVSVVS LYRHPVPMAL LAVTSRAPFL FSPNPKPLSP SSFYSHLSLS PRSPRFPSLR FRSATGDASD AGKPAGKISD EWGEDYDPEA EALTSKLPDS
101: DPPKDEDEWQ EGGAPDAGGY VDGGNGTPVT GAEDPAEEEV DDKLEALKRA LVDTLYGTEL GIRAGSEVRA EVSELVSQLE AANPTLAPVE EPALLNGNWV
201: LLYTASSELL PLLAAGRLPL LKVDKITQTI DTSSSTIINS TTLSSPFASL SFSASASFEV RTPTRIQVTF KEGSIQPPEI KSNVELPENV DIFGQKLSLQ
301: PLQQSLGPLQ GLVENISRVI SGQPPLKIPI PGERTSSWLL TTYLDKDLRI SRGDGGLFVL AREGSPLLDQ

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.