Factsheet for Zm00001d030074_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94440	Sorghum	plastid	91.36	91.6
Os10t0575700-00	Rice	plastid	69.37	70.86
PGSC0003DMT400008946	Potato	plastid	29.06	64.16
TraesCS1D01G197400.1	Wheat	plastid	59.42	63.06
TraesCS1A01G193500.1	Wheat	plastid	59.42	63.06
TraesCS1B01G208500.1	Wheat	plastid	59.16	62.78
HORVU1Hr1G050640.1	Barley	cytosol	58.9	57.25
Bra005337.1-P	Field mustard	plastid	51.05	54.17
CDY31692	Canola	plastid	51.05	54.17
CDX84202	Canola	plastid	50.79	53.59
GSMUA_Achr6P01070_001	Banana	plastid	53.66	53.39
Solyc08g076480.2.1	Tomato	plastid	45.81	50.87
AT2G35490.1	Thale cress	plastid	49.48	50.27
VIT_02s0012g02050.t01	Wine grape	plastid	49.74	49.74
KRH74371	Soybean	nucleus, plastid	47.91	49.46
PGSC0003DMT400038350	Potato	cytosol	45.55	42.34
Zm00001d025574_P001	Maize	extracellular	34.55	42.04
PGSC0003DMT400054304	Potato	plastid	46.6	41.88
Solyc08g005220.2.1	Tomato	plastid	45.55	41.63
Zm00001d003470_P001	Maize	plastid	33.51	40.25
GSMUA_Achr2P09810_001	Banana	plastid	21.47	30.83

Protein Annotations

EntrezGene:100282938	MapMan:35.1	UniProt:A0A096PRE6	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0010287	GO:GO:0016020	ProteinID:ONM00131.1	InterPro:PAP/fibrillin_dom	PFAM:PF04755	PANTHER:PTHR31906
PANTHER:PTHR31906:SF5	UniParc:UPI0002220E35	EnsemblPlantsGene:Zm00001d030074	EnsemblPlants:Zm00001d030074_P001	EnsemblPlants:Zm00001d030074_T001	SEG:seg

Description

fibrillin1

Coordinates

chr1:+:103634381..103637965

Molecular Weight (calculated)

40841.8 Da

IEP (calculated)

4.317

GRAVY (calculated)

-0.390

Length

382 amino acids

Sequence
(BLAST)

001: MAPLFAAASH ASLLPLSSLD RPAAGHLVRG TLRPHTSSLR LRRPPGATGR GRGRGRGGIP DEWGERSPPD NPEPPAQPDP PIDEDEWGRD DSAEGNSRPI
101: VVDEWGEPGV PEPEPPSAAD PPSPSADDDW GKEPEAPAPA PAPAAEEDEQ EVKREELKRC LVDTVYGSDL GFRASTEVRG EVVELVTQLE AVNPTTAPVE
201: SPDLLDGNWI LIYTAYSELL PILAAGATPL VKVKQISQEI DSKIMTIVNA STLTTPFASF SFSATASFEV QSPSRIEVQF KEGSFQPPTI SSSVDLPQQV
301: DIFGQKISLG PVQQALNPLQ QAFASIAGSI SGQPPLKVPI PGNNRARSWL LTTYLDKDLR ISRGDGGLFI LAKEGSPLLD QL

Best Arabidopsis Sequence Match ( AT2G35490.1 )
(BLAST)

001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL

Arabidopsis Description

PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.