Factsheet for Zm00001d025574_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001784_P002
Zm00001d002405_P001
Zm00001d003470_P001
Zm00001d004086_P001
Zm00001d010476_P001
Zm00001d016457_P001
Zm00001d018515_P002
Zm00001d024376_P001
Zm00001d025574_P001
Zm00001d026252_P001
Zm00001d026652_P001
Zm00001d031895_P001
Zm00001d038109_P002
Zm00001d038667_P001
Zm00001d050195_P001
Zm00001d051861_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	Zm00001d010476_P001	AT1G18040.1	21798944
AT4G04020.1	Zm00001d038109_P002	AT1G18040.1	21798944
AT4G04020.1	Zm00001d002405_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d004086_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d016457_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d024376_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d026252_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d050195_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d003470_P001	AT4G04020.1	21798944
AT4G04020.1	Zm00001d025574_P001	AT4G04020.1	21798944
AT4G04020.1	Zm00001d038667_P001	AT4G21070.1	16957774
AT4G04020.1	Zm00001d003470_P001	AT4G22240.1	24937144
AT4G04020.1	Zm00001d025574_P001	AT4G22240.1	24937144
AT4G04020.1	Zm00001d031895_P001	AT5G22890.1	21798944
AT4G22240.1	Zm00001d001784_P002	AT3G61310.1	21798944
AT4G22240.1	Zm00001d018515_P002	AT3G61310.1	21798944
AT4G22240.1	Zm00001d026652_P001	AT3G61310.1	21798944
AT4G22240.1	Zm00001d051861_P001	AT3G61310.1	21798944
AT4G22240.1	Zm00001d003470_P001	AT4G04020.1	24937144
AT4G22240.1	Zm00001d025574_P001	AT4G04020.1	24937144
AT4G22240.1	Zm00001d003470_P001	AT4G22240.1	24937144
AT4G22240.1	Zm00001d025574_P001	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003470_P001	Maize	plastid	83.76	82.7
Os09t0133600-01	Rice	plastid	73.25	72.1
GSMUA_Achr7P05510_001	Banana	cytosol	56.37	71.08
TraesCS5B01G162100.1	Wheat	plastid	69.43	69.87
TraesCS5A01G164600.1	Wheat	plastid	69.11	69.11
CDY71809	Canola	plastid	37.58	62.77
KRH36517	Soybean	plastid	58.6	58.97
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	69.11	58.18
GSMUA_Achr3P12980_001	Banana	plastid	59.24	58.12
KRH11500	Soybean	plastid	56.37	57.84
PGSC0003DMT400043112	Potato	extracellular	57.64	55.52
Solyc02g081170.2.1	Tomato	plastid	57.32	55.21
Bra013602.1-P	Field mustard	plastid	55.1	54.23
CDX79139	Canola	plastid	54.46	53.6
AT4G22240.1	Thale cress	plastid	52.87	53.55
GSMUA_Achr4P20110_001	Banana	plastid	53.18	53.53
CDX82925	Canola	plastid	53.82	53.31
CDY16684	Canola	plastid	53.82	53.14
Bra029481.1-P	Field mustard	plastid	53.5	52.83
CDX90850	Canola	plastid	52.55	52.22
CDY21291	Canola	plastid	51.91	51.58
AT4G04020.1	Thale cress	plastid	51.59	50.94
Bra000785.1-P	Field mustard	plastid	52.23	50.15
CDX94540	Canola	plastid	17.2	36.24
Zm00001d030074_P001	Maize	plastid	42.04	34.55

Protein Annotations

EnsemblPlants:Zm00001d025574_P001	EnsemblPlants:Zm00001d025574_T001	EnsemblPlantsGene:Zm00001d025574	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7
PFAM:PF04755	ProteinID:AQK43989.1	SEG:seg	UniParc:UPI0002209F70	UniProt:K7UIX3	MapMan:35.1

Description

Probable plastid-lipid-associated protein 2 chloroplastic

Coordinates

chr10:+:122791789..122795379

Molecular Weight (calculated)

33612.1 Da

IEP (calculated)

5.596

GRAVY (calculated)

-0.141

Length

314 amino acids

Sequence
(BLAST)

001: MAGSALLNAL VLRAPSPSLS SSSKRRSAGA FVSSNPPRFP SLRSERRVAL PRAAAGGDPE DEWVPEPEGG SAVTGTAVAE APEAGEVAEL KAQLKDALYG
101: TERGLRASSE SRAKVLELIT QLETRNPTPA PTEALTLLNG KWILAYTSFS QLFPLLEFGK LPALVKVEEI SQTIDSKNFT VQNCIKFSGP LATTSVSTNA
201: KFEIRSPKRV QIKFDEGIVG TPQLTDSVVL PEKFEVFGQN IDLSPLKGIF SSIENAASSV AKTISGQPPL KIPIRANNAE SWLLTTYLDE EVRISRGEGG
301: GIFVLFKEGS TLLN

Best Arabidopsis Sequence Match ( AT4G22240.1 )
(BLAST)

001: MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG
101: LSASSETRAE IGDLITQLES KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLSRGIVPLI KVDEISQTID SDNFTVQNSV RFAGPLGTNS ISTNAKFEIR
201: SPKRVQIKFE QGVIGTPQLT DSIEIPEYVE VLGQKIDLNP IRGLLTSVQD TASSVARTIS SQPPLKFSLP ADNAQSWLLT TYLDKDIRIS RGDGGSVFVL
301: IKEGSPLLNP

Arabidopsis Description

PAP2Probable plastid-lipid-associated protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.