Factsheet for Bra013602.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000785.1-P
Bra003446.1-P
Bra007595.1-P
Bra013602.1-P
Bra014444.1-P
Bra029481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22240.1	Bra003446.1-P	AT3G61310.1	21798944
AT4G22240.1	Bra007595.1-P	AT3G61310.1	21798944
AT4G22240.1	Bra014444.1-P	AT3G61310.1	21798944
AT4G22240.1	Bra000785.1-P	AT4G04020.1	24937144
AT4G22240.1	Bra029481.1-P	AT4G04020.1	24937144
AT4G22240.1	Bra013602.1-P	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79139	Canola	plastid	95.61	95.61
CDX82925	Canola	plastid	89.34	89.91
AT4G22240.1	Thale cress	plastid	75.86	78.06
Bra029481.1-P	Field mustard	plastid	73.98	74.21
GSMUA_Achr7P05510_001	Banana	cytosol	54.86	70.28
Bra000785.1-P	Field mustard	plastid	71.79	70.03
KRH11500	Soybean	plastid	61.76	64.38
KRH36517	Soybean	plastid	61.76	63.14
Solyc02g081170.2.1	Tomato	plastid	64.26	62.88
PGSC0003DMT400043112	Potato	extracellular	63.95	62.58
GSMUA_Achr3P12980_001	Banana	plastid	57.68	57.5
TraesCS5B01G162100.1	Wheat	plastid	56.11	57.37
TraesCS5A01G164600.1	Wheat	plastid	56.11	57.01
Os09t0133600-01	Rice	plastid	55.49	55.49
Zm00001d025574_P001	Maize	extracellular	54.23	55.1
Zm00001d003470_P001	Maize	plastid	54.23	54.4
EES12270	Sorghum	plastid	56.11	54.24
GSMUA_Achr4P20110_001	Banana	plastid	50.16	51.28
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	53.92	46.11
Bra005337.1-P	Field mustard	plastid	36.99	32.78

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra013602	EnsemblPlants:Bra013602.1	EnsemblPlants:Bra013602.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0010287	GO:GO:0016020	GO:GO:0031977	UniProt:M4DAU2
InterPro:PAP/fibrillin_dom	PFAM:PF04755	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7	UniParc:UPI0002545556	SEG:seg

Description

AT4G22240 (E=2e-120) | plastid-lipid associated protein PAP, putative

Coordinates

chrA01:-:6588836..6589884

Molecular Weight (calculated)

34649.2 Da

IEP (calculated)

4.460

GRAVY (calculated)

-0.108

Length

319 amino acids

Sequence
(BLAST)

001: MATVQFFNQF PCKTRVQCPS NSKPLSKPPS SLVPMSALTR RPSFSPGEFA VSRSDFRVRV IDAEDELDPE TSEGGGSALL MAEEAIESVE ETEVLKRSLV
101: DSLYGTDRGL SASSETRAEI GDLITQLESK NPTPAPTDAL FLLNGKWILA YTSFVGLFPL LSRGIVPLVK VDEISQTIDS DNFTVENSVL FAGPLATTSI
201: STNAKFEIRS PKRVQIKFEE GVIGTPQLTD SIEIPEYVEF LGQKIDLTPI RGLLTSVQDT ATSVARTISS QPPLKFSLPG DSAQSWLLTT YLDKDIRISR
301: GDGGSVFVLI KEGSPLLNP

Best Arabidopsis Sequence Match ( AT4G22240.1 )
(BLAST)

001: MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG
101: LSASSETRAE IGDLITQLES KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLSRGIVPLI KVDEISQTID SDNFTVQNSV RFAGPLGTNS ISTNAKFEIR
201: SPKRVQIKFE QGVIGTPQLT DSIEIPEYVE VLGQKIDLNP IRGLLTSVQD TASSVARTIS SQPPLKFSLP ADNAQSWLLT TYLDKDIRIS RGDGGSVFVL
301: IKEGSPLLNP

Arabidopsis Description

PAP2Probable plastid-lipid-associated protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.