Factsheet for Zm00001d003470_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001784_P002
Zm00001d002405_P001
Zm00001d003470_P001
Zm00001d004086_P001
Zm00001d010476_P001
Zm00001d016457_P001
Zm00001d018515_P002
Zm00001d024376_P001
Zm00001d025574_P001
Zm00001d026252_P001
Zm00001d026652_P001
Zm00001d031895_P001
Zm00001d038109_P002
Zm00001d038667_P001
Zm00001d050195_P001
Zm00001d051861_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	Zm00001d010476_P001	AT1G18040.1	21798944
AT4G04020.1	Zm00001d038109_P002	AT1G18040.1	21798944
AT4G04020.1	Zm00001d002405_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d004086_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d016457_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d024376_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d026252_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d050195_P001	AT2G24570.1	21798944
AT4G04020.1	Zm00001d003470_P001	AT4G04020.1	21798944
AT4G04020.1	Zm00001d025574_P001	AT4G04020.1	21798944
AT4G04020.1	Zm00001d038667_P001	AT4G21070.1	16957774
AT4G04020.1	Zm00001d003470_P001	AT4G22240.1	24937144
AT4G04020.1	Zm00001d025574_P001	AT4G22240.1	24937144
AT4G04020.1	Zm00001d031895_P001	AT5G22890.1	21798944
AT4G22240.1	Zm00001d001784_P002	AT3G61310.1	21798944
AT4G22240.1	Zm00001d018515_P002	AT3G61310.1	21798944
AT4G22240.1	Zm00001d026652_P001	AT3G61310.1	21798944
AT4G22240.1	Zm00001d051861_P001	AT3G61310.1	21798944
AT4G22240.1	Zm00001d003470_P001	AT4G04020.1	24937144
AT4G22240.1	Zm00001d025574_P001	AT4G04020.1	24937144
AT4G22240.1	Zm00001d003470_P001	AT4G22240.1	24937144
AT4G22240.1	Zm00001d025574_P001	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12270	Sorghum	plastid	88.36	85.15
Zm00001d025574_P001	Maize	extracellular	82.7	83.76
Os09t0133600-01	Rice	plastid	76.42	76.18
GSMUA_Achr7P05510_001	Banana	cytosol	56.92	72.69
TraesCS5B01G162100.1	Wheat	plastid	69.81	71.15
TraesCS5A01G164600.1	Wheat	plastid	69.5	70.38
CDY71809	Canola	plastid	37.11	62.77
GSMUA_Achr3P12980_001	Banana	plastid	60.06	59.69
KRH36517	Soybean	plastid	58.18	59.29
KRH11500	Soybean	plastid	55.97	58.17
PGSC0003DMT400043112	Potato	extracellular	59.12	57.67
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	67.3	57.37
Solyc02g081170.2.1	Tomato	plastid	58.8	57.36
CDX82925	Canola	plastid	54.72	54.89
CDX79139	Canola	plastid	54.72	54.55
Bra013602.1-P	Field mustard	plastid	54.4	54.23
GSMUA_Achr4P20110_001	Banana	plastid	53.14	54.17
Bra029481.1-P	Field mustard	plastid	53.77	53.77
CDX90850	Canola	plastid	53.14	53.48
CDY16684	Canola	plastid	53.46	53.46
AT4G22240.1	Thale cress	plastid	51.26	52.58
CDY21291	Canola	plastid	51.89	52.22
AT4G04020.1	Thale cress	plastid	51.89	51.89
Bra000785.1-P	Field mustard	plastid	52.83	51.38
CDX94540	Canola	plastid	17.92	38.26
Zm00001d030074_P001	Maize	plastid	40.25	33.51

Protein Annotations

EMBL:BT039786	EMBL:EU967023	EnsemblPlants:Zm00001d003470_P001	EnsemblPlants:Zm00001d003470_T001	EnsemblPlantsGene:Zm00001d003470	EntrezGene:100284078
InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7	PFAM:PF04755	ProteinID:ONM17000.1	SEG:seg
UniParc:UPI00017B76BC	UniProt:B4FRP8	MapMan:35.1	:	:	:

Description

Probable plastid-lipid-associated protein 2 chloroplastic

Coordinates

chr2:+:45281416..45286675

Molecular Weight (calculated)

34282.8 Da

IEP (calculated)

5.088

GRAVY (calculated)

-0.142

Length

318 amino acids

Sequence
(BLAST)

001: MASSAFLNAL VLRSPSPSLS SSSNRRSTGA FAFPNPPRFP CLRSARRLVL ARAAAAPAPG DGPEDEWGPE PEGGSAVTGA AVAEAPEARE VAELKAQLKD
101: ALYGTERGLR ASSESRAKVL ELITQLETRN PTPAPTEALT LLNGKWILAY TSFSQLFPLL GFGNLPQLVK VEEISQTIDS ENFTVQNCIK FSGPLATTSV
201: ATNAKFEIRS PKRVQIKFDE GIVGTPQLTD SIVLPEKFEL FGQNIDLSPL KGIFSSIENA ASSVAKTISE QPPLKIPIRT NNAESWLLTT YLDEELRISR
301: GDGSSIFVLF KEGSTLLY

Best Arabidopsis Sequence Match ( AT4G22240.1 )
(BLAST)

001: MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG
101: LSASSETRAE IGDLITQLES KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLSRGIVPLI KVDEISQTID SDNFTVQNSV RFAGPLGTNS ISTNAKFEIR
201: SPKRVQIKFE QGVIGTPQLT DSIEIPEYVE VLGQKIDLNP IRGLLTSVQD TASSVARTIS SQPPLKFSLP ADNAQSWLLT TYLDKDIRIS RGDGGSVFVL
301: IKEGSPLLNP

Arabidopsis Description

PAP2Probable plastid-lipid-associated protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.