Factsheet for TraesCS5A01G164600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G060200.1
TraesCS1A01G245600.1
TraesCS1A01G329600.1
TraesCS1B01G078700.1
TraesCS1B01G256600.1
TraesCS1B01G343100.2
TraesCS1D01G061200.1
TraesCS1D01G183400.1
TraesCS1D01G205200.1
TraesCS1D01G245300.1
TraesCS1D01G331700.1
TraesCS2A01G241400.1
TraesCS2A01G270200.2
TraesCS2A01G433000.1
TraesCS2A01G582300.1
TraesCS2B01G338000.1
TraesCS2B01G454300.1
TraesCS2B01G604700.1
TraesCS2D01G269200.1
TraesCS2D01G431000.1
TraesCS2D01G597900.1
TraesCS3A01G431600.1
TraesCS3B01G187800.1
TraesCS5A01G060200.1
TraesCS5A01G164600.1
TraesCS5A01G373100.1
TraesCS5A01G436400.1
TraesCS5B01G067700.1
TraesCS5B01G162100.1
TraesCS5B01G204300.1
TraesCS5B01G375100.1
TraesCS5D01G071800.1
TraesCS5D01G219900.1
TraesCS5D01G326900.1
TraesCS5D01G382600.1
TraesCS5D01G456700.1
TraesCS6A01G192200.1
TraesCS6A01G403700.1
TraesCS6B01G447600.1
TraesCS6D01G175100.1
TraesCS7A01G565900.1
TraesCS7D01G254800.1
TraesCSU01G270200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	TraesCS1A01G245600.1	AT1G18040.1	21798944
AT4G04020.1	TraesCS1B01G256600.1	AT1G18040.1	21798944
AT4G04020.1	TraesCS1D01G245300.1	AT1G18040.1	21798944
AT4G04020.1	TraesCS2A01G270200.2	AT2G24570.1	21798944
AT4G04020.1	TraesCS2A01G433000.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS2B01G454300.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS2D01G269200.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS2D01G431000.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS5A01G060200.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS5A01G373100.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS5B01G067700.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS5B01G375100.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS5D01G071800.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS5D01G382600.1	AT2G24570.1	21798944
AT4G04020.1	TraesCS5A01G164600.1	AT4G04020.1	21798944
AT4G04020.1	TraesCS5B01G162100.1	AT4G04020.1	21798944
AT4G04020.1	TraesCS1A01G329600.1	AT4G21070.1	16957774
AT4G04020.1	TraesCS1B01G343100.2	AT4G21070.1	16957774
AT4G04020.1	TraesCS1D01G331700.1	AT4G21070.1	16957774
AT4G04020.1	TraesCS5A01G164600.1	AT4G22240.1	24937144
AT4G04020.1	TraesCS5B01G162100.1	AT4G22240.1	24937144
AT4G04020.1	TraesCS1A01G060200.1	AT5G22890.1	21798944
AT4G04020.1	TraesCS1B01G078700.1	AT5G22890.1	21798944
AT4G04020.1	TraesCS1D01G061200.1	AT5G22890.1	21798944
AT4G22240.1	TraesCS2A01G582300.1	AT3G61310.1	21798944
AT4G22240.1	TraesCS2B01G604700.1	AT3G61310.1	21798944
AT4G22240.1	TraesCS2D01G597900.1	AT3G61310.1	21798944
AT4G22240.1	TraesCS6A01G403700.1	AT3G61310.1	21798944
AT4G22240.1	TraesCS6B01G447600.1	AT3G61310.1	21798944
AT4G22240.1	TraesCS7A01G565900.1	AT3G61310.1	21798944
AT4G22240.1	TraesCS5A01G164600.1	AT4G04020.1	24937144
AT4G22240.1	TraesCS5B01G162100.1	AT4G04020.1	24937144
AT4G22240.1	TraesCS5A01G164600.1	AT4G22240.1	24937144
AT4G22240.1	TraesCS5B01G162100.1	AT4G22240.1	24937144
AT4G22240.1	TraesCS1D01G183400.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS1D01G205200.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS2A01G241400.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS2B01G338000.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS3A01G431600.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS3B01G187800.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS5A01G436400.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS5B01G204300.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS5D01G219900.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS5D01G326900.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS5D01G456700.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS6A01G192200.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS6D01G175100.1	ATCG00810.1	24937144
AT4G22240.1	TraesCS7D01G254800.1	ATCG00810.1	24937144
AT4G22240.1	TraesCSU01G270200.1	ATCG00810.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G162100.1	Wheat	plastid	97.45	98.08
GSMUA_Achr7P05510_001	Banana	cytosol	58.28	73.49
Os09t0133600-01	Rice	plastid	73.25	72.1
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	83.12	69.97
Zm00001d003470_P001	Maize	plastid	70.38	69.5
Zm00001d025574_P001	Maize	extracellular	69.11	69.11
EES12270	Sorghum	plastid	71.97	68.48
CDY71809	Canola	plastid	38.22	63.83
GSMUA_Achr3P12980_001	Banana	plastid	61.78	60.62
KRH11500	Soybean	plastid	57.64	59.15
KRH36517	Soybean	plastid	57.32	57.69
GSMUA_Achr4P20110_001	Banana	plastid	57.01	57.37
CDX79139	Canola	plastid	57.32	56.43
Bra013602.1-P	Field mustard	plastid	57.01	56.11
CDX82925	Canola	plastid	56.37	55.84
PGSC0003DMT400043112	Potato	extracellular	57.96	55.83
CDY16684	Canola	plastid	56.37	55.66
Bra029481.1-P	Field mustard	plastid	56.37	55.66
Solyc02g081170.2.1	Tomato	plastid	57.64	55.52
CDX90850	Canola	plastid	55.41	55.06
CDY21291	Canola	plastid	55.1	54.75
AT4G04020.1	Thale cress	plastid	55.1	54.4
AT4G22240.1	Thale cress	plastid	53.18	53.87
Bra000785.1-P	Field mustard	plastid	55.73	53.52
CDX94540	Canola	plastid	19.43	40.94
TraesCS1A01G193500.1	Wheat	plastid	38.53	33.61

Protein Annotations

EnsemblPlants:TraesCS5A01G164600.1	EnsemblPlantsGene:TraesCS5A01G164600	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7	PFAM:PF04755
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:353189151..353192053

Molecular Weight (calculated)

33057.4 Da

IEP (calculated)

8.440

GRAVY (calculated)

0.039

Length

314 amino acids

Sequence
(BLAST)

001: MAGVAASLNA ASLSAPSPQA PGATAARGRL LVPAAARRFP SLRAARRVVA ARAAPVDADD EWGKEPAVGG TSVAEAPSEA AAAAVEVAAL KQKLKAALYG
101: TERGLRASSE TRAEVVELIT QLEARNPTPA PTEALTLLNG KWILAYTSFS QLFPLLGSGR LQALVKVDEI SQTIDSENFA VQNCIKFSGP LASTSVSTNA
201: KFEIRSPKRV QIKFEEGIIG TPQLTDSIVL PEKFEFFGQN IDLSPLSGIF TSIENAASSV AKTISGQPPL KIPFRSESAG SWLLTTYLDA ELRISRGDGS
301: SIFVLFKEGS SLSI

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.