Factsheet for TraesCS6D01G175100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50794	Barley	cytosol, mitochondrion	100.0	100.0
TraesCS7D01G254800.1	Wheat	cytosol, mitochondrion	99.33	99.33
TraesCS5D01G219900.1	Wheat	mitochondrion	89.93	97.81
TraesCS1D01G205200.1	Wheat	mitochondrion	89.26	97.08
TraesCS5D01G326900.1	Wheat	mitochondrion	89.26	96.38
CAA33935	Rice	cytosol, mitochondrion	95.97	95.97
TraesCS5D01G456700.1	Wheat	mitochondrion	87.92	95.62
TraesCS1D01G183400.1	Wheat	mitochondrion	88.59	89.8
Os12t0488300-00	Rice	mitochondrion	77.85	78.91
VIT_17s0000g02610.t01	Wine grape	cytosol, mitochondrion	21.48	58.18
GSMUA_Achr11P...	Banana	cytosol	49.66	57.36
ATCG00810.1	Thale cress	mitochondrion	43.62	40.62
CDY28604	Canola	mitochondrion	43.62	40.62
CDY21180	Canola	mitochondrion	43.62	40.62
CDX91812	Canola	mitochondrion	43.62	40.62
KRG93170	Soybean	mitochondrion	38.26	28.79
KRH56510	Soybean	plastid	38.93	27.75

Protein Annotations

MapMan:17.7.2.1.20	Gene3D:3.90.470.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:IPR036394
HAMAP:MF_01331_B	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR13501	PANTHER:PTHR13501:SF7	InterPro:Ribosomal_L22
InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_sf	InterPro:Ribosomal_L22_bac/chlpt-type	SUPFAM:SSF54843	TIGRFAMs:TIGR01044	EnsemblPlantsGene:TraesCS6D01G175100
EnsemblPlants:TraesCS6D01G175100.1	TIGR:cd00336	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:168249614..168250063

Molecular Weight (calculated)

17688.4 Da

IEP (calculated)

11.545

GRAVY (calculated)

-0.362

Length

149 amino acids

Sequence
(BLAST)

001: MTSFKLVKYI PRIKKKKSGL RKLARKVPTD RLLKFERVFK AQKRIPMSVF KAQRVLDEIR WRYYEETVMI LNLMPYRASY PILKLVYSAA ANATHYRDFD
101: KANLFITKAE VSRSTIMKKF RPRARGRSFP IKKSMCHITI VLNIVKKSK

Best Arabidopsis Sequence Match ( ATCG00810.1 )
(BLAST)

001: MIKKRKKKSY TEVYALGQYI SMSAHKARRV IDQIRGRSYE EALMILELMP YRGCYPIFKL VYSAAANASH NKGFKETNLV ISKAEVNQGN TVKKLKPRAR
101: GRSYPIKRST CHITIVLEDI SFYQQYEEYL MYLKKPGCSN ENRNLTCYDT YSSGGLWDKK

Arabidopsis Description

RPL2250S ribosomal protein L22, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56795]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.