Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G447600.1 | Wheat | nucleus | 82.11 | 92.57 |
| Os02t0824300-01 | Rice | nucleus | 59.89 | 80.71 |
| Zm00001d018515_P002 | Maize | nucleus | 57.63 | 78.87 |
| OQU85994 | Sorghum | nucleus | 58.95 | 78.05 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 55.37 | 73.5 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 36.35 | 62.87 |
| VIT_15s0046g02930.t01 | Wine grape | nucleus, plastid | 31.45 | 48.41 |
| KRH05193 | Soybean | plastid | 12.99 | 46.94 |
| KRH65066 | Soybean | nucleus | 29.19 | 45.59 |
| KRH40471 | Soybean | nucleus | 29.19 | 45.45 |
| KRH48165 | Soybean | nucleus | 29.0 | 45.29 |
| KRH00715 | Soybean | nucleus | 29.0 | 45.03 |
| VIT_02s0025g03580.t01 | Wine grape | nucleus | 29.19 | 44.8 |
| PGSC0003DMT400000467 | Potato | nucleus | 28.06 | 43.95 |
| Solyc01g094460.2.1 | Tomato | nucleus | 28.06 | 43.95 |
| Bra014444.1-P | Field mustard | nucleus | 26.93 | 42.94 |
| KRH27929 | Soybean | nucleus | 28.44 | 42.9 |
| PGSC0003DMT400014926 | Potato | plastid | 27.68 | 42.61 |
| Solyc08g080960.2.1 | Tomato | nucleus | 26.55 | 42.22 |
| Solyc08g008030.2.1 | Tomato | nucleus | 27.5 | 42.2 |
| CDX89109 | Canola | nucleus | 26.55 | 42.09 |
| KRH77536 | Soybean | nucleus | 28.25 | 42.02 |
| CDY42495 | Canola | nucleus | 26.74 | 42.01 |
| CDY37070 | Canola | nucleus | 26.55 | 41.35 |
| Bra039309.1-P | Field mustard | nucleus | 26.55 | 41.35 |
| AT2G45850.1 | Thale cress | nucleus | 26.93 | 41.09 |
| CDY27354 | Canola | nucleus | 26.74 | 40.69 |
| CDY51561 | Canola | nucleus | 25.99 | 40.59 |
| CDY58791 | Canola | nucleus | 25.05 | 40.55 |
| CDY48928 | Canola | nucleus | 25.8 | 39.83 |
| KRH59866 | Soybean | nucleus | 26.37 | 39.77 |
| Bra025511.1-P | Field mustard | nucleus | 20.72 | 39.71 |
| Bra007595.1-P | Field mustard | nucleus | 25.42 | 39.59 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 26.93 | 39.5 |
| KRH41165 | Soybean | nucleus | 26.18 | 39.49 |
| CDX71746 | Canola | nucleus | 25.42 | 39.24 |
| CDY25500 | Canola | nucleus | 27.12 | 38.92 |
| CDY45364 | Canola | nucleus | 26.74 | 38.69 |
| AT3G61310.1 | Thale cress | nucleus, plastid | 25.61 | 38.42 |
| Bra027642.1-P | Field mustard | nucleus | 27.31 | 38.06 |
| Bra027801.1-P | Field mustard | nucleus | 26.74 | 37.87 |
| AT1G63470.1 | Thale cress | nucleus | 26.74 | 37.57 |
| CDY34355 | Canola | nucleus | 26.74 | 37.57 |
| Bra003446.1-P | Field mustard | nucleus | 23.73 | 37.17 |
| AT1G63480.1 | Thale cress | nucleus | 25.05 | 36.84 |
| TraesCS7A01G248500.1 | Wheat | nucleus | 25.05 | 35.95 |
| PGSC0003DMT400031843 | Potato | plastid | 25.99 | 35.94 |
| TraesCS2A01G449500.1 | Wheat | plastid | 26.55 | 34.39 |
| CDY39751 | Canola | nucleus | 24.48 | 34.03 |
| CDY46385 | Canola | nucleus | 24.11 | 33.51 |
| TraesCS5A01G130500.1 | Wheat | plastid | 21.47 | 30.89 |
| TraesCS7A01G134300.1 | Wheat | cytosol | 11.3 | 30.46 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 23.16 | 30.45 |
| TraesCS5A01G267000.1 | Wheat | nucleus, peroxisome, vacuole | 22.41 | 29.97 |
| TraesCS7A01G315100.1 | Wheat | plastid | 21.47 | 28.64 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 24.29 | 28.41 |
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 20.34 | 27.27 |
| TraesCS5A01G266900.1 | Wheat | cytosol | 0.38 | 1.71 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G403700.1 | EnsemblPlantsGene:TraesCS6A01G403700 | Gene3D:3.30.1330.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:AT_hook_DNA-bd_motif | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF41 |
| PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SMART:SM00384 | SUPFAM:SSF117856 | TIGR:cd11378 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:610902375..610905987
Molecular Weight (calculated)
53948.0 Da
IEP (calculated)
6.849
GRAVY (calculated)
-0.602
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRESTATS GPNYSPFYVQ HRGMGPPGGV PGGGLHAPPA AGYRQQQLDA VSGGYTFHQP PFGAPAHIGQ QVYHQNHVEM APQHGAGAGG SQHMTQHSIG
101: GAGGGGSQHM VQHSAGGGGG SQHMAQHSGG GGGSQHMAQH NTGAGGGADG GMDIGMGVVA VSGDAKGDQG GEAGQDEQVK KKRGRPRKYK PDGSVTLGLS
201: PSPSTPHSSS PGMGTMVTTP GSGFGPGTGS GGSGSGALTE KRGRGRPPGS GKMQQLASLG KWFLGSVGTG FTPHVIIISA GEDVAARIMS FSQQGPRAIC
301: IISATGAVST ATLHQDSDSG AVTYEGRFEI LCLSGSYLVV EEGGTRTRSG GLCIALCGPD HRVIGGSVSG VLTAAGTVQV IVGSFMYGGG SKKNKGKADQ
401: DVENEEQNGG GGGEETPTLA LPEHPHNMPP HPMSGWPAGL MSQMDPRSSP MYGGGSNKNK TKAEQDMEDE ERNGGGGGGE EPLAMAHPEH NMNPEHNMNM
501: PPPHPMGGWQ PGLMRQMDSR SSSIDINSIR E
101: GAGGGGSQHM VQHSAGGGGG SQHMAQHSGG GGGSQHMAQH NTGAGGGADG GMDIGMGVVA VSGDAKGDQG GEAGQDEQVK KKRGRPRKYK PDGSVTLGLS
201: PSPSTPHSSS PGMGTMVTTP GSGFGPGTGS GGSGSGALTE KRGRGRPPGS GKMQQLASLG KWFLGSVGTG FTPHVIIISA GEDVAARIMS FSQQGPRAIC
301: IISATGAVST ATLHQDSDSG AVTYEGRFEI LCLSGSYLVV EEGGTRTRSG GLCIALCGPD HRVIGGSVSG VLTAAGTVQV IVGSFMYGGG SKKNKGKADQ
401: DVENEEQNGG GGGEETPTLA LPEHPHNMPP HPMSGWPAGL MSQMDPRSSP MYGGGSNKNK TKAEQDMEDE ERNGGGGGGE EPLAMAHPEH NMNPEHNMNM
501: PPPHPMGGWQ PGLMRQMDSR SSSIDINSIR E
001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
Arabidopsis Description
AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.