Factsheet for PGSC0003DMT400031843

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000467

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	PGSC0003DMT400000467	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080960.2.1	Tomato	nucleus	82.55	94.91
PGSC0003DMT400014926	Potato	plastid	66.67	74.2
KRH05193	Soybean	plastid	23.18	60.54
VIT_02s0025g03580.t01	Wine grape	nucleus	51.04	56.65
KRH27929	Soybean	nucleus	47.14	51.42
KRH77536	Soybean	nucleus	46.88	50.42
KRH59866	Soybean	nucleus	45.83	50.0
KRH41165	Soybean	nucleus	44.79	48.86
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	41.67	48.05
PGSC0003DMT400000467	Potato	nucleus	41.67	47.2
Bra025511.1-P	Field mustard	nucleus	33.59	46.57
GSMUA_Achr8P11400_001	Banana	nucleus	41.67	46.24
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	22.4	43.88
CDY25500	Canola	nucleus	41.93	43.51
GSMUA_Achr11P...	Banana	nucleus	41.93	43.4
GSMUA_Achr11P...	Banana	nucleus	42.19	43.2
AT1G63470.1	Thale cress	nucleus	42.19	42.86
CDY64088	Canola	nucleus, plasma membrane, plastid	40.36	42.82
CDY45364	Canola	nucleus	40.36	42.23
Bra027642.1-P	Field mustard	nucleus	41.41	41.73
Bra027801.1-P	Field mustard	nucleus	40.36	41.33
CDY34355	Canola	nucleus	40.36	41.01
AT1G63480.1	Thale cress	nucleus	38.54	41.0
GSMUA_Achr4P30000_001	Banana	nucleus	34.64	40.8
PGSC0003DMT400045285	Potato	cytosol	15.62	40.54
HORVU2Hr1G123730.3	Barley	plastid	22.14	40.48
CDY39751	Canola	nucleus	38.54	38.74
CDY46385	Canola	nucleus	38.02	38.22
TraesCS7A01G565900.1	Wheat	nucleus	29.43	36.81
PGSC0003DMT400032575	Potato	plastid	30.99	36.73
PGSC0003DMT400010017	Potato	plastid	30.21	36.36
Zm00001d018515_P002	Maize	nucleus	36.72	36.34
Os02t0824300-01	Rice	nucleus	36.98	36.04
OQU85994	Sorghum	nucleus	36.98	35.41
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	36.46	35.0
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	29.95	34.64
PGSC0003DMT400045147	Potato	plastid	28.39	33.03
PGSC0003DMT400075370	Potato	nucleus	29.69	31.84
PGSC0003DMT400059682	Potato	nucleus	26.82	31.6
PGSC0003DMT400079651	Potato	nucleus	28.12	31.21
TraesCS2A01G582300.1	Wheat	nucleus	32.55	30.94
PGSC0003DMT400073848	Potato	nucleus	26.56	30.91
PGSC0003DMT400071865	Potato	plastid	24.48	30.52
TraesCS2B01G604700.1	Wheat	nucleus	31.77	30.27
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	31.25	29.63
PGSC0003DMT400035486	Potato	nucleus, plastid	19.79	29.12
Os04t0683900-01	Rice	nucleus	31.51	28.88
Zm00001d026652_P001	Maize	plastid	29.69	28.72
TraesCS6B01G447600.1	Wheat	nucleus	35.16	28.66
PGSC0003DMT400052826	Potato	nucleus	26.82	28.61
KXG27470	Sorghum	nucleus	30.73	28.23
PGSC0003DMT400007056	Potato	nucleus	28.12	26.6
Zm00001d001784_P002	Maize	nucleus	29.95	26.44
HORVU7Hr1G122340.3	Barley	nucleus	23.7	26.07
TraesCS6A01G403700.1	Wheat	nucleus	35.94	25.99
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	21.35	25.15

Protein Annotations

EnsemblPlants:PGSC0003DMT400031843	EnsemblPlantsGene:PGSC0003DMG400012215	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF9	PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG400012215	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000295ED91	UniProt:M1AWC6	MapMan:35.1	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012215]

Coordinates

chr8:-:54680887..54685571

Molecular Weight (calculated)

39313.7 Da

IEP (calculated)

9.958

GRAVY (calculated)

-0.450

Length

384 amino acids

Sequence
(BLAST)

001: MALSGSAAYY LNRGISGSGS SVGSGSGTPT GVPTPSGYKS LTNANIAVQS NMGSSSGNVN SGYQVENSSS NFGHGVNISM TSSVSPGSDP VKKKRGRPRK
101: YGPDGTNMSL ALSPLSSNPP SGSITPGPKR IRGRPPGSGW KQQLSSVGEW MSSSAGLAFT PHVIHIGVGE DIAEKLLAFA QQRPRALCIL SANGAVSAIT
201: LRPPANSGAT VTYEGRFEIL CLSGSYLVAE TGGPRTRTGG ISISVCSPDG HVIGGAIGGR LIAASPVQVV VCSFVYDPKG KSKPESSTRD EQESAEKSST
301: PVSATLNQGP TSGSGRGVWP PTSRTDSKPE SSTRDEQESA EKSSTPVSAT LNQGPTSGSG RGVWPPTSRT DVRNSQTEID LTRG

Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)

001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG

Arabidopsis Description

AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.