Factsheet for PGSC0003DMT400000467

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000467
PGSC0003DMT400010017
PGSC0003DMT400032575
PGSC0003DMT400052826

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45850.1	PGSC0003DMT400010017	AT4G12080.1	21798944
AT2G45850.1	PGSC0003DMT400032575	AT4G12080.1	21798944
AT2G45850.1	PGSC0003DMT400052826	AT4G17950.1	21798944
AT3G61310.1	PGSC0003DMT400000467	AT2G45850.1	21798944
AT3G61310.1	PGSC0003DMT400000467	AT3G61310.1	21798944
AT3G61310.1	PGSC0003DMT400010017	AT4G12080.1	21798944
AT3G61310.1	PGSC0003DMT400032575	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094460.2.1	Tomato	nucleus	97.05	97.05
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	65.49	64.35
KRH65066	Soybean	nucleus	61.65	61.47
KRH48165	Soybean	nucleus	61.06	60.88
KRH40471	Soybean	nucleus	61.06	60.7
KRH00715	Soybean	nucleus	60.47	59.94
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	54.87	55.86
GSMUA_Achr8P11400_001	Banana	nucleus	50.15	49.13
GSMUA_Achr11P...	Banana	nucleus	53.69	49.06
GSMUA_Achr11P...	Banana	nucleus	53.69	48.53
PGSC0003DMT400045285	Potato	cytosol	20.65	47.3
Bra007595.1-P	Field mustard	nucleus	46.9	46.63
CDX89109	Canola	nucleus	46.02	46.57
Bra014444.1-P	Field mustard	nucleus	45.72	46.55
CDY48928	Canola	nucleus	47.2	46.51
AT2G45850.1	Thale cress	nucleus	47.49	46.26
CDY42495	Canola	nucleus	46.02	46.15
CDX71746	Canola	nucleus	46.61	45.93
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	26.55	45.92
CDY37070	Canola	nucleus	45.72	45.45
Bra039309.1-P	Field mustard	nucleus	45.72	45.45
CDY58791	Canola	nucleus	43.95	45.43
CDY27354	Canola	nucleus	46.31	44.99
CDY51561	Canola	nucleus	44.54	44.41
AT3G61310.1	Thale cress	nucleus, plastid	46.31	44.35
PGSC0003DMT400014926	Potato	plastid	45.13	44.35
GSMUA_Achr4P30000_001	Banana	nucleus	41.59	43.25
Bra003446.1-P	Field mustard	nucleus	41.89	41.89
PGSC0003DMT400031843	Potato	plastid	47.2	41.67
TraesCS7A01G565900.1	Wheat	nucleus	36.58	40.39
Os02t0824300-01	Rice	nucleus	46.02	39.59
PGSC0003DMT400032575	Potato	plastid	37.76	39.51
PGSC0003DMT400010017	Potato	plastid	36.87	39.19
Zm00001d018515_P002	Maize	nucleus	44.25	38.66
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	37.17	37.95
HORVU2Hr1G123730.3	Barley	plastid	23.3	37.62
PGSC0003DMT400045147	Potato	plastid	36.58	37.58
OQU85994	Sorghum	nucleus	43.66	36.91
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	42.48	36.0
PGSC0003DMT400059682	Potato	nucleus	33.33	34.66
PGSC0003DMT400075370	Potato	nucleus	35.69	33.8
PGSC0003DMT400035486	Potato	nucleus, plastid	25.96	33.72
PGSC0003DMT400073848	Potato	nucleus	32.45	33.33
PGSC0003DMT400079651	Potato	nucleus	32.15	31.5
PGSC0003DMT400071865	Potato	plastid	28.61	31.49
TraesCS6B01G447600.1	Wheat	nucleus	42.77	30.79
PGSC0003DMT400052826	Potato	nucleus	31.86	30.0
TraesCS2A01G582300.1	Wheat	nucleus	35.69	29.95
Os04t0683900-01	Rice	nucleus	36.28	29.36
HORVU7Hr1G122340.3	Barley	nucleus	30.09	29.23
Zm00001d026652_P001	Maize	plastid	33.92	28.97
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	34.51	28.89
TraesCS2B01G604700.1	Wheat	nucleus	33.92	28.54
KXG27470	Sorghum	nucleus	35.1	28.47
TraesCS6A01G403700.1	Wheat	nucleus	43.95	28.06
PGSC0003DMT400007056	Potato	nucleus	33.33	27.83
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	25.07	26.07
Zm00001d001784_P002	Maize	nucleus	33.33	25.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400000467	EnsemblPlantsGene:PGSC0003DMG400000159	EntrezGene:102588291	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG400000159	RefSeq:XP_006339552.1
RefSeq:XP_006339553.1	RefSeq:XP_015167232.1	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000296AF5F	UniProt:M0ZGS4
MapMan:35.1	:	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000159]

Coordinates

chr1:-:71992387..72001333

Molecular Weight (calculated)

34916.7 Da

IEP (calculated)

10.983

GRAVY (calculated)

-0.214

Length

339 amino acids

Sequence
(BLAST)

001: MDRREAMMLP GSSPYYMQRG MSGSGSGNAP GLQGSPSINP SLTPTNIAFQ SSGSGASIPQ TLVMDPASTI SPRGSIGASS AMPQGEPVRR KRGRPRKYGA
101: QAAMSLTLTP PPSTQAMSLN PTQKRGRGRP PGSGRKQQLA SFGGWLSNTA GIGFTPHVIM IAVGEDITTK IMSFSQQGPR SICILSANGV ISTVTLRQPS
201: TSGGTVTYEG RFEILCLSGS FLVNESGGSR GRIGSLSVSL ASPDGRVIGG GVGGVLIAAS PIQVIVGSFL CSSSKAKKRA AESVQSAGTS DLQTTDNSVN
301: PADALSNQNL APSSSMGVWP SSRQMDLQTG HIDIDLMRG

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.