Factsheet for PGSC0003DMT400073848

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006190.1.1	Tomato	nucleus	95.76	93.77
VIT_14s0081g00620.t01	Wine grape	nucleus	59.39	54.9
KRH68809	Soybean	nucleus	56.36	53.76
KRG97062	Soybean	nucleus	57.88	52.91
CDY52506	Canola	nucleus	45.15	42.69
Bra020612.1-P	Field mustard	nucleus	45.45	42.61
CDY05594	Canola	nucleus	45.45	42.13
AT5G28590.1	Thale cress	mitochondrion	26.67	40.74
PGSC0003DMT400045285	Potato	cytosol	18.18	40.54
CDY52477	Canola	nucleus	45.15	40.49
CDY65362	Canola	nucleus	45.15	40.05
Bra009999.1-P	Field mustard	nucleus	45.15	40.05
Bra040133.1-P	Field mustard	nucleus	45.76	39.43
CDY30005	Canola	nucleus	45.45	39.37
CDY21122	Canola	nucleus	45.76	39.12
AT3G04590.2	Thale cress	nucleus	48.48	38.93
CDY13231	Canola	nucleus	40.61	32.68
PGSC0003DMT400000467	Potato	nucleus	33.33	32.45
PGSC0003DMT400059682	Potato	nucleus	31.21	31.6
PGSC0003DMT400045147	Potato	plastid	31.52	31.52
PGSC0003DMT400032575	Potato	plastid	30.3	30.86
PGSC0003DMT400010017	Potato	plastid	29.7	30.72
PGSC0003DMT400075370	Potato	nucleus	31.82	29.33
PGSC0003DMT400014926	Potato	plastid	30.61	29.28
PGSC0003DMT400035486	Potato	nucleus, plastid	23.03	29.12
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	29.09	28.92
PGSC0003DMT400071865	Potato	plastid	25.15	26.95
PGSC0003DMT400079651	Potato	nucleus	28.18	26.88
PGSC0003DMT400031843	Potato	plastid	30.91	26.56
PGSC0003DMT400052826	Potato	nucleus	27.58	25.28
PGSC0003DMT400007056	Potato	nucleus	27.88	22.66
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	21.82	22.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400073848	EnsemblPlantsGene:PGSC0003DMG400028695	EntrezGene:102601837	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF22	PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG400028695	RefSeq:XP_006350948.1
SEG:seg	SUPFAM:SSF117856	UniParc:UPI000295B796	UniProt:M1CSS4	MapMan:35.1	:

Description

SAP1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028695]

Coordinates

chr11:+:6465388..6475042

Molecular Weight (calculated)

34154.0 Da

IEP (calculated)

9.334

GRAVY (calculated)

-0.483

Length

330 amino acids

Sequence
(BLAST)

001: MEPNETSGLN SYYHHLHHQP PPSQPPQNPN PTTTTNGIVP NNNPTATANT TVAAASHMVY TGSLPSAVSP PMESVKRKRG RPRKYSTPEQ AAAAKRLSSA
101: SAPPKKRDHG LSHVAGADGG GSSSKKSQLA ALGNAGQGFT PHIITVSAGE DVGQKIMMFM QQSKHELCIL SASGSVSNAS LRQPATSGGS ITYEGRFDIL
201: TLAGSYVRTE TGGRTGGLSV CLASTDGQII GGGVGGPLIA GGPIQVIVGA FSVDSKAGGL KHDTSPQFGG SPLSFRSMVD SSNQSMGGGQ FMMPSRGMQP
301: TPLHSTDWRV STGQGLHQSP ENGDYDHLQD

Best Arabidopsis Sequence Match ( AT3G04590.1 )
(BLAST)

001: MDPNESHHHH QQQQLHHLHQ QQQQQQQQQR LTSPYFHHQL QHHHHLPTTV ATTASTGNAV PSSNNGLFPP QPQPQHQPND GSSSLAVYPH SVPSSAVTAP
101: MEPVKRKRGR PRKYVTPEQA LAAKKLASSA SSSSAKQRRE LAAVTGGTVS TNSGSSKKSQ LGSVGKTGQC FTPHIVNIAP GEDVVQKIMM FANQSKHELC
201: VLSASGTISN ASLRQPAPSG GNLPYEGQYE ILSLSGSYIR TEQGGKSGGL SVSLSASDGQ IIGGAIGSHL TAAGPVQVIL GTFQLDRKKD AAGSGGKGDA
301: SNSGKVCRV

Arabidopsis Description

AHL14AT-hook motif nuclear-localized protein 14 [Source:UniProtKB/Swiss-Prot;Acc:A1L4X7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.