Factsheet for Bra020612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52506	Canola	nucleus	96.31	97.13
Bra009999.1-P	Field mustard	nucleus	82.95	78.49
AT5G28590.1	Thale cress	mitochondrion	45.17	73.61
Bra040133.1-P	Field mustard	nucleus	63.92	58.75
KRH68809	Soybean	nucleus	46.59	47.4
KRG97062	Soybean	nucleus	47.16	45.98
VIT_14s0081g00620.t01	Wine grape	nucleus	46.59	45.94
PGSC0003DMT400073848	Potato	nucleus	42.61	45.45
Solyc11g006190.1.1	Tomato	nucleus	42.33	44.21
Bra022946.1-P	Field mustard	nucleus	24.43	32.82
Bra025716.1-P	Field mustard	nucleus	22.44	29.37
Bra007595.1-P	Field mustard	nucleus	26.14	26.98
Bra039309.1-P	Field mustard	nucleus	26.14	26.98
Bra037321.1-P	Field mustard	nucleus	24.15	26.9
Bra014444.1-P	Field mustard	nucleus	25.28	26.73
Bra025717.1-P	Field mustard	nucleus	22.44	26.07
Bra025511.1-P	Field mustard	nucleus	19.89	25.27
Bra027642.1-P	Field mustard	nucleus	27.27	25.2
Bra033121.1-P	Field mustard	nucleus	22.16	25.16
Bra025718.1-P	Field mustard	nucleus, plastid	21.31	24.67
Bra019359.1-P	Field mustard	nucleus	23.01	24.62
Bra019174.1-P	Field mustard	nucleus	27.56	24.49
Bra027801.1-P	Field mustard	nucleus	25.85	24.27
Bra021865.1-P	Field mustard	nucleus	23.86	24.0
Bra013886.1-P	Field mustard	nucleus	25.85	23.88
Bra003446.1-P	Field mustard	nucleus	22.44	23.3
Bra013646.1-P	Field mustard	nucleus	20.17	23.28
Bra017536.1-P	Field mustard	nucleus	22.73	22.66
Bra029164.1-P	Field mustard	nucleus	26.14	21.7
Bra035899.1-P	Field mustard	nucleus	24.15	21.68
Bra021027.1-P	Field mustard	nucleus	24.43	20.98
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	23.58	20.7
Bra028265.1-P	Field mustard	nucleus	25.0	20.51
Bra013270.1-P	Field mustard	nucleus	24.43	20.19
Bra010070.1-P	Field mustard	nucleus	23.01	20.1
Bra022555.1-P	Field mustard	nucleus	23.86	20.05

Protein Annotations

EnsemblPlants:Bra020612.1	EnsemblPlants:Bra020612.1-P	EnsemblPlantsGene:Bra020612	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF22	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI00025468D1	UniProt:M4DVR8	MapMan:35.1	:	:	:

Description

AT3G04590 (E=1e-051) | DNA-binding family protein

Coordinates

chrA02:+:24211831..24213989

Molecular Weight (calculated)

37041.7 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.746

Length

352 amino acids

Sequence
(BLAST)

001: MEPNERHHHH HHHQEHHLTS PYYHPFHHHT PTTVSAAPSD NGNFPPPPND GSSSSYHHSA PSSAPIEPVK RKRGRPRKYD TPAQALAAKK LASSASSSSA
101: REKREQTAAA AGVSPPSKPG SKKSLSGSSG KSGQSFTPHI VNITPGEDVA QKIIHFAEQS KHELCILSAS GTISDASLSH LATGTSASYQ GQYEILSLSG
201: SYIRGEHGGK TGGLSVCLSS SDGQIVGGGV GGLLKAAGPV QVILGTFQLE RKKDGRNGVK GDDASGSGDL LPSSPSGAES LHGYRPVMEP SGRNSNDEHC
301: TMTSGGAHFM MQPPRGMHMT HARSSEWDGA GYDLSGMRGN GSLENGEYKW AD

Best Arabidopsis Sequence Match ( AT3G04590.2 )
(BLAST)

001: MDPNESHHHH QQQQLHHLHQ QQQQQQQQQR LTSPYFHHQL QHHHHLPTTV ATTASTGNAV PSSNNGLFPP QPQPQHQPND GSSSLAVYPH SVPSSAVTAP
101: MEPVKRKRGR PRKYVTPEQA LAAKKLASSA SSSSAKQRRE LAAVTGGTVS TNSGSSKKSQ LGSVGKTGQC FTPHIVNIAP GEDVVQKIMM FANQSKHELC
201: VLSASGTISN ASLRQPAPSG GNLPYEGQYE ILSLSGSYIR TEQGGKSGGL SVSLSASDGQ IIGGAIGSHL TAAGPVQVIL GTFQLDRKKD AAGSGGKGDA
301: SNSGSRLTSP VSSGQLLGMG FPPGMESTGR NPMRGNDEQH DHHHHQAGLG GPHHFMMQAP QGIHMTHSRP SEWRGGGNSG HDGRGGGGYD LSGRIGHESS
401: ENGDYEQQIP D

Arabidopsis Description

AHL14AT-hook motif nuclear-localized protein 14 [Source:UniProtKB/Swiss-Prot;Acc:A1L4X7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.