Factsheet for Bra027642.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34355	Canola	nucleus	95.8	96.56
CDY25500	Canola	nucleus	91.86	94.59
Bra027801.1-P	Field mustard	nucleus	84.78	86.13
AT1G63470.1	Thale cress	nucleus	83.2	83.86
Bra025511.1-P	Field mustard	nucleus	47.77	65.7
KRH05193	Soybean	plastid	22.31	57.82
VIT_02s0025g03580.t01	Wine grape	nucleus	49.61	54.62
KRH27929	Soybean	nucleus	49.08	53.12
KRH77536	Soybean	nucleus	48.29	51.54
KRH59866	Soybean	nucleus	47.51	51.42
KRH41165	Soybean	nucleus	46.72	50.57
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	44.09	50.45
Solyc08g080960.2.1	Tomato	nucleus	41.47	47.31
GSMUA_Achr8P11400_001	Banana	nucleus	42.26	46.53
Solyc08g008030.2.1	Tomato	nucleus	41.21	45.38
PGSC0003DMT400014926	Potato	plastid	40.94	45.22
GSMUA_Achr11P...	Banana	nucleus	43.31	44.47
Bra007595.1-P	Field mustard	nucleus	39.63	44.28
GSMUA_Achr11P...	Banana	nucleus	43.57	44.27
Bra014444.1-P	Field mustard	nucleus	38.58	44.14
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	22.57	43.88
Bra039309.1-P	Field mustard	nucleus	38.85	43.4
Bra022946.1-P	Field mustard	nucleus	28.61	41.6
PGSC0003DMT400031843	Potato	plastid	41.73	41.41
GSMUA_Achr4P30000_001	Banana	nucleus	33.86	39.57
Bra003446.1-P	Field mustard	nucleus	34.38	38.64
Os02t0824300-01	Rice	nucleus	38.32	37.06
HORVU2Hr1G123730.3	Barley	plastid	20.21	36.67
Zm00001d018515_P002	Maize	nucleus	37.01	36.34
TraesCS7A01G565900.1	Wheat	nucleus	28.61	35.5
OQU85994	Sorghum	nucleus	36.75	34.91
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	35.96	34.25
Bra037321.1-P	Field mustard	nucleus	27.82	33.54
Bra019359.1-P	Field mustard	nucleus	28.35	32.83
Bra013646.1-P	Field mustard	nucleus	26.25	32.79
Bra033121.1-P	Field mustard	nucleus	26.51	32.58
Bra021865.1-P	Field mustard	nucleus	28.35	30.86
TraesCS6B01G447600.1	Wheat	nucleus	36.48	29.51
Os04t0683900-01	Rice	nucleus	32.28	29.36
TraesCS2B01G604700.1	Wheat	nucleus	30.97	29.28
TraesCS2A01G582300.1	Wheat	nucleus	30.97	29.21
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	30.45	28.64
Bra021027.1-P	Field mustard	nucleus	30.71	28.54
Zm00001d026652_P001	Maize	plastid	29.66	28.46
KXG27470	Sorghum	nucleus	30.97	28.23
TraesCS6A01G403700.1	Wheat	nucleus	38.06	27.31
Bra035899.1-P	Field mustard	nucleus	28.08	27.3
Bra019174.1-P	Field mustard	nucleus	28.35	27.27
Bra020612.1-P	Field mustard	nucleus	25.2	27.27
Bra017536.1-P	Field mustard	nucleus	25.2	27.2
Bra025716.1-P	Field mustard	nucleus	19.16	27.14
Bra025717.1-P	Field mustard	nucleus	21.52	27.06
Bra022555.1-P	Field mustard	nucleus	29.66	26.97
Bra029164.1-P	Field mustard	nucleus	29.92	26.89
Bra040133.1-P	Field mustard	nucleus	26.77	26.63
Bra010070.1-P	Field mustard	nucleus	28.08	26.55
Bra009999.1-P	Field mustard	nucleus	25.72	26.34
Bra028265.1-P	Field mustard	nucleus	29.4	26.11
Bra013270.1-P	Field mustard	nucleus	29.13	26.06
Bra013886.1-P	Field mustard	nucleus	25.98	25.98
Zm00001d001784_P002	Maize	nucleus	29.13	25.52
Bra025718.1-P	Field mustard	nucleus, plastid	20.21	25.33
HORVU7Hr1G122340.3	Barley	nucleus	23.1	25.21
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	25.98	24.69

Protein Annotations

EnsemblPlants:Bra027642.1	EnsemblPlants:Bra027642.1-P	EnsemblPlantsGene:Bra027642	Gene3D:3.30.1330.80	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:AT_hook_DNA-bd_motif	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF9	PFAM:PF03479	PFscan:PS51742	PRINTS:PR00929	SEG:seg	SMART:SM00384
SUPFAM:SSF117856	UniParc:UPI0002542410	UniProt:M4EFS9	MapMan:35.1	:	:

Description

AT1G63470 (E=4e-143) | DNA-binding family protein

Coordinates

chrA09:+:7184665..7186470

Molecular Weight (calculated)

40036.1 Da

IEP (calculated)

9.385

GRAVY (calculated)

-0.559

Length

381 amino acids

Sequence
(BLAST)

001: MDGREAMSFP SHYYLPRGAF TNLSPSQVAS GLHAPPPGMR PMSNPNVHHP QANNPGPHFS MADHRHSDFG HGIHMGMASS AAVQPPPLPQ QPPPMEQPLV
101: KKKRGRPRKY APDGQVSLRL SPVACSSAGS NKAKDSSAVT DPNAPKRARG RPPGTGRKQR LANLGEWMNT SAGFAFAPHV ISVGAGEDIV SKVMSFSQQR
201: PRALCIMSGT GTVSSVTLRQ PATTEPSLTY EGRFEILSLG GSYLVNEEGG SKSRTGGLSV SLSGPEGHVI GGGIGMLIAA SLVQVVACSF VYGGVPKSNN
301: NNNKTIKQEG EPKEEHNDSE METTPTNPEA AAEQVAQQTP QNFSGQGMSG WPGSGEGSVS GSGRSLDSSR NLLTDIDLTR G

Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)

001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG

Arabidopsis Description

AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.