Factsheet for Bra017536.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35172	Canola	nucleus	99.72	99.72
AT5G46640.1	Thale cress	nucleus	66.57	60.88
Bra021027.1-P	Field mustard	nucleus	56.37	48.54
Bra025716.1-P	Field mustard	nucleus	33.71	44.24
Bra013270.1-P	Field mustard	nucleus	52.69	43.66
Bra022946.1-P	Field mustard	nucleus	30.03	40.46
Bra025717.1-P	Field mustard	nucleus	34.56	40.26
VIT_02s0012g00900.t01	Wine grape	nucleus	39.09	39.09
Os10t0572900-02	Rice	nucleus	27.48	38.65
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	20.68	38.42
Bra025718.1-P	Field mustard	nucleus, plastid	31.44	36.51
Solyc04g053090.1.1	Tomato	plastid	17.28	36.09
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	35.41	35.51
KRH58200	Soybean	nucleus	36.26	35.36
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	30.59	35.18
KRH04337	Soybean	nucleus	34.84	34.55
KRH28286	Soybean	plastid	32.01	33.33
Solyc04g053100.1.1	Tomato	plastid	15.58	33.13
OQU82226	Sorghum	plastid	32.01	32.56
KRH77206	Soybean	nucleus	31.16	32.54
GSMUA_Achr2P09840_001	Banana	nucleus	32.29	31.93
Os04t0589900-01	Rice	nucleus	34.28	31.93
Bra021865.1-P	Field mustard	nucleus	30.88	31.14
PGSC0003DMT400052826	Potato	nucleus	31.73	31.11
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	16.15	30.16
Zm00001d026036_P001	Maize	nucleus	33.71	29.6
Bra007595.1-P	Field mustard	nucleus	28.33	29.33
Bra014444.1-P	Field mustard	nucleus	27.48	29.13
Bra039309.1-P	Field mustard	nucleus	28.05	29.03
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	33.71	28.88
TraesCS2A01G449500.1	Wheat	plastid	33.14	28.54
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	33.14	28.4
Zm00001d030053_P003	Maize	plastid	33.43	28.3
Bra037321.1-P	Field mustard	nucleus	25.21	28.16
Bra025511.1-P	Field mustard	nucleus	22.1	28.16
KXG38867	Sorghum	plastid	33.43	27.9
Solyc08g006950.2.1	Tomato	nucleus	30.88	27.88
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	33.14	27.27
Bra033121.1-P	Field mustard	nucleus	23.51	26.77
TraesCS1B01G206100.2	Wheat	nucleus	33.71	26.39
TraesCS1A01G190900.1	Wheat	nucleus	33.71	26.21
TraesCS1D01G194900.2	Wheat	nucleus	33.71	26.21
Bra013646.1-P	Field mustard	nucleus	22.38	25.9
HORVU1Hr1G049980.12	Barley	nucleus	33.71	25.65
Bra019359.1-P	Field mustard	nucleus	23.8	25.53
Bra027801.1-P	Field mustard	nucleus	26.91	25.33
Bra027642.1-P	Field mustard	nucleus	27.2	25.2
Bra003446.1-P	Field mustard	nucleus	24.08	25.07
Bra035899.1-P	Field mustard	nucleus	26.35	23.72
Bra009999.1-P	Field mustard	nucleus	24.08	22.85
Bra010070.1-P	Field mustard	nucleus	26.06	22.83
Bra020612.1-P	Field mustard	nucleus	22.66	22.73
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	25.78	22.69
Bra040133.1-P	Field mustard	nucleus	23.51	21.67
Bra013886.1-P	Field mustard	nucleus	23.23	21.52
Bra019174.1-P	Field mustard	nucleus	24.08	21.46
Bra029164.1-P	Field mustard	nucleus	25.78	21.46
Bra022555.1-P	Field mustard	nucleus	24.65	20.76
Bra028265.1-P	Field mustard	nucleus	25.21	20.75

Protein Annotations

EnsemblPlants:Bra017536.1	EnsemblPlants:Bra017536.1-P	EnsemblPlantsGene:Bra017536	Gene3D:3.30.1330.80	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:AT_hook_DNA-bd_motif	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF17	PFAM:PF03479	PFscan:PS51742	PRINTS:PR00929	SEG:seg	SMART:SM00384
SUPFAM:SSF117856	UniParc:UPI00025424BB	UniProt:M4DM05	MapMan:35.1	:	:

Description

AT5G46640 (E=3e-092) | DNA-binding family protein

Coordinates

chrA09:-:16169601..16171096

Molecular Weight (calculated)

37724.1 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.584

Length

353 amino acids

Sequence
(BLAST)

001: MDSRDIPQQF QPPLFHYPNF NTSAMMGPNS TSQSINHRLT FGSLTPRGTL QQQEEQLDQK TLESLGYVDE VSPSSQPMRS GIDQSQQQVK RKRGRPRKYA
101: PDGTIALGLA PTSPLLGDGD SGRVNTNSAK RARGRPPGSI KKQYDALGTS GGMFTHVIEV QEGEEIVSKV AALSTQGPRT VIVLSAAGAV SRVILHNASG
201: IQNYKGQFEI VTLSGSFSNY EVNGSIERTG SLTVALAGPN AQILGGLVGR LVAVTPVQII VGSFVDEAKK LKQSTGNNAQ GQNPEPASAP ANMLNFGSNS
301: QGPSSESSDE NESGSPSVQH HDNNNNGIYG NSMAQQQQLR QMQMYNLWPS SGQ

Best Arabidopsis Sequence Match ( AT5G46640.1 )
(BLAST)

001: MDSRDIPPSH NQLQPPPGML MSHYRNPNAA ASPLMVPTST SQPIQHPRLP FGNQQQSQTF HQQQQQQMDQ KTLESLGFGD GSPSSQPMRF GIDDQNQQLQ
101: VKKKRGRPRK YTPDGSIALG LAPTSPLLSA ASNSYGEGGV GDSGGNGNSV DPPVKRNRGR PPGSSKKQLD ALGGTSGVGF TPHVIEVNTG EDIASKVMAF
201: SDQGSRTICI LSASGAVSRV MLRQASHSSG IVTYEGRFEI ITLSGSVLNY EVNGSTNRSG NLSVALAGPD GGIVGGSVVG NLVAATQVQV IVGSFVAEAK
301: KPKQSSVNIA RGQNPEPASA PANMLNFGSV SQGPSSESSE ENESGSPAMH RDNNNGIYGA QQQQQQQPLH PHQMQMYQHL WSNHGQ

Arabidopsis Description

AHL8AT-hook motif nuclear-localized protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.