Factsheet for HORVU1Hr1G049980.12

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G123730.3
HORVU3Hr1G087700.1
HORVU7Hr1G122340.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	HORVU2Hr1G123730.3	AT1G63470.1	21798944
AT4G17950.1	HORVU7Hr1G122340.3	AT1G63470.1	21798944
AT4G17950.1	HORVU3Hr1G087700.1	AT3G51780.1	21798944
AT4G17950.1	HORVU2Hr1G123730.3	AT3G61310.1	21798944
AT4G17950.1	HORVU7Hr1G122340.3	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G206100.2	Wheat	nucleus	95.26	98.0
TraesCS1A01G190900.1	Wheat	nucleus	95.69	97.8
TraesCS1D01G194900.2	Wheat	nucleus	95.26	97.36
Os10t0572900-02	Rice	nucleus	51.08	94.42
KXG38867	Sorghum	plastid	72.41	79.43
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	72.41	78.32
Zm00001d030053_P003	Maize	plastid	70.26	78.18
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	28.66	70.0
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	45.26	59.66
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	38.58	58.31
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	23.71	58.2
GSMUA_Achr2P09840_001	Banana	nucleus	44.4	57.7
VIT_02s0012g00900.t01	Wine grape	nucleus	38.79	50.99
PGSC0003DMT400045147	Potato	plastid	33.41	46.97
Solyc04g053090.1.1	Tomato	plastid	16.81	46.15
KRH58200	Soybean	nucleus	33.84	43.37
Solyc04g053100.1.1	Tomato	plastid	15.3	42.77
HORVU7Hr1G051150.4	Barley	nucleus	32.97	41.69
KRH04337	Soybean	nucleus	31.25	40.73
Solyc08g077030.2.1	Tomato	nucleus	35.34	40.1
CDY01503	Canola	cytosol	22.2	39.77
KRH28286	Soybean	plastid	28.23	38.64
HORVU0Hr1G015180.2	Barley	cytosol, extracellular	19.61	38.56
HORVU5Hr1G073550.1	Barley	nucleus, peroxisome, plastid	32.54	38.52
KRH77206	Soybean	nucleus	28.02	38.46
PGSC0003DMT400052826	Potato	nucleus	29.53	38.06
HORVU2Hr1G123730.3	Barley	plastid	16.59	36.67
AT5G46640.1	Thale cress	nucleus	29.53	35.49
CDY03203	Canola	nucleus	26.72	34.64
Solyc08g006950.2.1	Tomato	nucleus	28.88	34.27
CDY35172	Canola	nucleus	25.65	33.71
Bra017536.1-P	Field mustard	nucleus	25.65	33.71
CDX78814	Canola	nucleus	29.31	33.42
Bra021027.1-P	Field mustard	nucleus	28.88	32.68
HORVU7Hr1G075040.1	Barley	plastid	27.16	32.06
CDY44500	Canola	nucleus	28.88	31.9
AT4G17950.1	Thale cress	nucleus	29.96	31.66
CDY68252	Canola	nucleus	20.26	31.65
CDY41027	Canola	cytosol	18.1	31.58
CDY08882	Canola	nucleus	29.53	31.49
CDY41028	Canola	nucleus, plastid	16.81	31.45
CDY01506	Canola	nucleus	20.26	31.23
CDX76549	Canola	nucleus	29.53	31.14
CDY26693	Canola	plastid	18.1	31.11
HORVU5Hr1G041290.4	Barley	cytosol, nucleus, peroxisome	25.0	31.1
Bra025716.1-P	Field mustard	nucleus	17.89	30.86
Bra025717.1-P	Field mustard	nucleus	20.04	30.69
CDY26692	Canola	nucleus	20.04	30.69
Bra025718.1-P	Field mustard	nucleus, plastid	19.83	30.26
CDY26694	Canola	cytosol, plastid	17.03	30.15
CDY26691	Canola	cytosol, plastid	19.83	29.58
Bra013270.1-P	Field mustard	nucleus	26.94	29.34
HORVU7Hr1G122340.3	Barley	nucleus	20.04	26.65
HORVU7Hr1G027950.1	Barley	extracellular, mitochondrion, plasma membrane	13.58	26.58
HORVU7Hr1G028110.15	Barley	plasma membrane	18.97	23.72

Protein Annotations

EnsemblPlants:HORVU1Hr1G049980.12	EnsemblPlantsGene:HORVU1Hr1G049980	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	ncoils:Coil
PANTHER:PTHR31500	PANTHER:PTHR31500:SF25	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000B4799A9	UniProt:A0A287FHY8	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:370587228..370591216

Molecular Weight (calculated)

48485.1 Da

IEP (calculated)

10.121

GRAVY (calculated)

-0.696

Length

464 amino acids

Sequence
(BLAST)

001: MEAKDVAPLA AATAAAPTAP VPAPAPAPAP VSQAKPQPQP QPQPPPIASM PPPPHPFAHH QQQHHHHQQQ QQQQQQPPAG SANPAAPMPG GGMRLSFDQM
101: VGKPPGEHHP HQHQHQHPHQ HQHQHQHQHQ HQHPHQHHAP GPMLYAAPPP HAVAPPPGSN ALGMGDLMRK KRGRPRKYAP DGSMALALAP LSSASGGAAP
201: PPPPGQQHGF SISSPPSDPN AKRRGRPPGS GKKKQFEALA GSWGISFTPH ILSVKAGEDV ASKIMSFSQQ GPRTVCILSA NGAISNVTLR QPATSGGLVT
301: YEGRFEIISL SGSFLLAEDG DTRSRTGGLS VALAGSDGRV LGGCVAGQLT AATPVQVVVA SFIAEGKKSK PAEPRKVEPM SAPPQMATYV PAPVASPPSE
401: GTSSASSDDS GSPINHGGMP YNHSGGQQHQ QQHMPPAYAS GGWSLSAHHQ NNNRHDADMK MMSN

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.