Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78814 | Canola | nucleus | 91.9 | 94.84 |
| CDY08882 | Canola | nucleus | 84.05 | 81.15 |
| CDX76549 | Canola | nucleus | 83.33 | 79.55 |
| Bra013270.1-P | Field mustard | nucleus | 78.81 | 77.7 |
| AT4G17950.1 | Thale cress | nucleus | 77.38 | 74.03 |
| CDY01503 | Canola | cytosol | 38.81 | 62.93 |
| CDY41027 | Canola | cytosol | 38.81 | 61.28 |
| CDY26694 | Canola | cytosol, plastid | 37.62 | 60.31 |
| CDY26693 | Canola | plastid | 38.57 | 60.0 |
| CDY01506 | Canola | nucleus | 42.38 | 59.14 |
| CDY03203 | Canola | nucleus | 50.24 | 58.94 |
| CDY68252 | Canola | nucleus | 41.19 | 58.25 |
| CDY35172 | Canola | nucleus | 48.81 | 58.07 |
| CDY26692 | Canola | nucleus | 40.48 | 56.11 |
| CDY26691 | Canola | cytosol, plastid | 40.71 | 54.98 |
| CDY41028 | Canola | nucleus, plastid | 32.38 | 54.84 |
| CDX84679 | Canola | nucleus | 28.81 | 46.18 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 28.57 | 45.8 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 37.86 | 45.04 |
| Os10t0572900-02 | Rice | nucleus | 26.67 | 44.62 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 19.52 | 43.16 |
| Solyc04g053090.1.1 | Tomato | plastid | 16.43 | 40.83 |
| KRH58200 | Soybean | nucleus | 35.0 | 40.61 |
| KRH28286 | Soybean | plastid | 32.38 | 40.12 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 29.05 | 39.74 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 33.1 | 39.49 |
| KRH04337 | Soybean | nucleus | 32.86 | 38.76 |
| Solyc04g053100.1.1 | Tomato | plastid | 15.24 | 38.55 |
| OQU82226 | Sorghum | plastid | 31.67 | 38.33 |
| KRH77206 | Soybean | nucleus | 30.71 | 38.17 |
| Os04t0589900-01 | Rice | nucleus | 34.29 | 37.99 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 32.14 | 37.82 |
| PGSC0003DMT400052826 | Potato | nucleus | 32.14 | 37.5 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 16.67 | 37.04 |
| CDY07239 | Canola | plasma membrane | 19.29 | 35.06 |
| Zm00001d026036_P001 | Maize | nucleus | 33.1 | 34.58 |
| CDY37704 | Canola | nucleus | 30.24 | 33.87 |
| CDY07238 | Canola | nucleus | 25.24 | 33.54 |
| CDY47428 | Canola | nucleus | 24.52 | 33.33 |
| CDY42495 | Canola | nucleus | 26.67 | 33.14 |
| Zm00001d030053_P003 | Maize | plastid | 32.86 | 33.09 |
| CDY04392 | Canola | nucleus | 20.95 | 32.84 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 32.14 | 32.77 |
| TraesCS2A01G449500.1 | Wheat | plastid | 31.9 | 32.68 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 33.33 | 32.63 |
| CDX89109 | Canola | nucleus | 25.95 | 32.54 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 31.9 | 32.52 |
| KXG38867 | Sorghum | plastid | 32.62 | 32.39 |
| CDY48928 | Canola | nucleus | 26.43 | 32.27 |
| CDY37070 | Canola | nucleus | 25.95 | 31.96 |
| CDY51561 | Canola | nucleus | 25.71 | 31.76 |
| CDY58791 | Canola | nucleus | 24.76 | 31.71 |
| CDX71746 | Canola | nucleus | 25.95 | 31.69 |
| CDY41291 | Canola | nucleus | 22.86 | 31.48 |
| Solyc08g006950.2.1 | Tomato | nucleus | 29.29 | 31.46 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 29.76 | 31.41 |
| CDY27354 | Canola | nucleus | 25.95 | 31.23 |
| CDY25500 | Canola | nucleus | 27.38 | 31.08 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 24.05 | 30.7 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 26.43 | 30.66 |
| CDY34355 | Canola | nucleus | 27.38 | 30.42 |
| CDX98767 | Canola | nucleus | 23.81 | 30.4 |
| CDY45364 | Canola | nucleus | 26.43 | 30.25 |
| CDX82971 | Canola | plastid | 15.24 | 29.77 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 31.9 | 29.71 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 31.9 | 29.52 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 31.9 | 29.52 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 31.9 | 28.88 |
| CDX94457 | Canola | nucleus | 24.52 | 27.25 |
| CDY39751 | Canola | nucleus | 24.52 | 26.96 |
| CDY46385 | Canola | nucleus | 24.29 | 26.7 |
| CDY16785 | Canola | nucleus | 24.76 | 26.53 |
| CDX87241 | Canola | nucleus | 24.52 | 26.34 |
| CDX86910 | Canola | nucleus | 24.76 | 26.07 |
| CDY00271 | Canola | nucleus | 25.0 | 26.05 |
| CDY05594 | Canola | nucleus | 21.9 | 25.84 |
| CDX92693 | Canola | nucleus | 24.29 | 25.76 |
| CDY30005 | Canola | nucleus | 23.33 | 25.72 |
| CDY21122 | Canola | nucleus | 23.57 | 25.65 |
| CDY49703 | Canola | nucleus | 24.29 | 25.56 |
| CDX89422 | Canola | nucleus | 23.33 | 25.52 |
| CDY52506 | Canola | nucleus | 21.19 | 25.5 |
| CDY38874 | Canola | nucleus | 25.48 | 25.3 |
| CDY52477 | Canola | nucleus | 22.14 | 25.27 |
| CDY65362 | Canola | nucleus | 22.38 | 25.27 |
| CDY00488 | Canola | nucleus | 25.71 | 25.17 |
| CDX91598 | Canola | nucleus | 25.0 | 25.06 |
| CDY32624 | Canola | nucleus | 25.24 | 25.0 |
| CDY30710 | Canola | nucleus | 23.81 | 24.94 |
| CDY65097 | Canola | nucleus | 24.76 | 24.82 |
| CDX99902 | Canola | nucleus | 25.48 | 24.37 |
| CDY13231 | Canola | nucleus | 21.19 | 21.71 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | GO:A0A078I0X2 | UniProt:A0A078I0X2 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY44500 |
| ProteinID:CDY44500 | ProteinID:CDY44500.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00080258001 | InterPro:IPR005175 | PFAM:PF03479 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF44 | SMART:SM00384 | SUPFAM:SSF117856 | UniParc:UPI0004EE24E9 | SEG:seg | : |
Description
BnaC01g10490DBnaC01g10490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0X2]
Coordinates
chrLK032592:+:97271..99176
Molecular Weight (calculated)
44053.5 Da
IEP (calculated)
9.878
GRAVY (calculated)
-0.749
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSRELHHHQ QHQHQQQLQQ QLQPPPGMLM GSFNRNPNAS ASASASLMGP TSTSQAMMHH RSSLPFGSLS PHHLHHHPQQ QMDQKTLESL GFEGSPSTQQ
101: QQQQPSMRFG IEQQQQVKKK RGRPRKYTPD ASNIGLALAP TSPLPSASNS HGGGNDGGGD SGGGGGGGGA NSTDPPAKRN RGRPPGSGKK QLDALGGTGG
201: VGFTPHVIEV KTGEDIAMKV VAFTHQGPRA ICILSATGAV SSVMFRQSSN PNGVVKYEGP YEIISMSGSF LNTESNGTVT KTGSLSVSLA RPDGQVVGGC
301: VAGMLVAGSQ VQVVVGSFVP EVKKPKQSAG HVQNTPEPAS APANMLSFGG GGGGPGSPRS QGQQQHSSES SDENESNSPL HRGSNNNHHG LFGNSPPQPL
401: HQMPMQQMYH PHLWPGHNPQ
101: QQQQPSMRFG IEQQQQVKKK RGRPRKYTPD ASNIGLALAP TSPLPSASNS HGGGNDGGGD SGGGGGGGGA NSTDPPAKRN RGRPPGSGKK QLDALGGTGG
201: VGFTPHVIEV KTGEDIAMKV VAFTHQGPRA ICILSATGAV SSVMFRQSSN PNGVVKYEGP YEIISMSGSF LNTESNGTVT KTGSLSVSLA RPDGQVVGGC
301: VAGMLVAGSQ VQVVVGSFVP EVKKPKQSAG HVQNTPEPAS APANMLSFGG GGGGPGSPRS QGQQQHSSES SDENESNSPL HRGSNNNHHG LFGNSPPQPL
401: HQMPMQQMYH PHLWPGHNPQ
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
Arabidopsis Description
AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.