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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • plastid 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:peroxisome
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g094460.2.1
Solyc08g008030.2.1
Solyc08g080960.2.1
Solyc10g085290.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17950.1 Solyc08g008030.2.1 AT1G63470.1 21798944
AT4G17950.1 Solyc08g080960.2.1 AT1G63470.1 21798944
AT4G17950.1 Solyc10g085290.1.1 AT3G51780.1 21798944
AT4G17950.1 Solyc01g094460.2.1 AT3G61310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400052826 Potato nucleus 66.24 71.94
Solyc04g053090.1.1 Tomato plastid 19.95 46.15
GSMUA_Achr5P03370_001 Banana mitochondrion, plastid 21.74 44.74
Solyc04g053100.1.1 Tomato plastid 18.67 43.98
Os10t0572900-02 Rice nucleus 27.62 43.03
HORVU2Hr1G105800.13 Barley cytosol, vacuole 29.67 37.78
GSMUA_Achr4P27240_001 Banana cytosol, extracellular, nucleus, plastid 33.76 37.5
KRH58200 Soybean nucleus 34.53 37.29
GSMUA_Achr2P09840_001 Banana nucleus 33.25 36.41
HORVU7Hr1G065300.2 Barley mitochondrion, plastid 17.14 35.45
Solyc08g077030.2.1 Tomato nucleus 36.57 34.96
OQU82226 Sorghum plastid 30.95 34.87
KRH28286 Soybean plastid 29.92 34.51
Os04t0589900-01 Rice nucleus 32.99 34.04
KRH04337 Soybean nucleus 30.69 33.71
CDY01503 Canola cytosol 22.25 33.59
Solyc12g094710.1.1 Tomato nucleus 29.92 32.77
Solyc08g079630.2.1 Tomato nucleus 26.85 32.71
CDY26693 Canola plastid 22.51 32.59
KRH77206 Soybean nucleus 28.13 32.54
Solyc02g038760.2.1 Tomato nucleus 27.11 32.52
Zm00001d030053_P003 Maize plastid 34.27 32.13
Bra025716.1-P Field mustard nucleus 21.99 31.97
AT5G46640.1 Thale cress nucleus 31.2 31.61
CDY41027 Canola cytosol 21.48 31.58
TraesCS2D01G448900.1 Wheat cytosol, nucleus, peroxisome, plastid 33.25 31.55
TraesCS2B01G470900.1 Wheat cytosol, nucleus, peroxisome, plastid 33.25 31.55
TraesCS2A01G449500.1 Wheat plastid 32.99 31.46
CDY41028 Canola nucleus, plastid 19.95 31.45
Solyc08g007530.2.1 Tomato nucleus 26.34 31.4
Zm00001d026036_P001 Maize nucleus 32.23 31.34
Zm00001d047042_P004 Maize cytosol, nucleus, plasma membrane 34.27 31.24
KXG38867 Sorghum plastid 33.76 31.21
CDY35172 Canola nucleus 27.88 30.88
Bra017536.1-P Field mustard nucleus 27.88 30.88
CDY26694 Canola cytosol, plastid 20.46 30.53
CDY03203 Canola nucleus 27.88 30.45
Bra025717.1-P Field mustard nucleus 23.53 30.36
CDY26692 Canola nucleus 23.53 30.36
Solyc02g082300.2.1 Tomato nucleus, plastid 20.2 30.27
CDX78814 Canola nucleus 31.46 30.22
Solyc01g091370.2.1 Tomato nucleus 24.55 30.19
Solyc03g007150.2.1 Tomato nucleus 25.06 30.15
Solyc01g094460.2.1 Tomato nucleus 25.83 29.79
TraesCS1D01G194900.2 Wheat nucleus 34.53 29.74
TraesCS1B01G206100.2 Wheat nucleus 34.27 29.71
Solyc08g080960.2.1 Tomato nucleus 25.32 29.64
TraesCS1A01G190900.1 Wheat nucleus 34.27 29.52
CDY44500 Canola nucleus 31.46 29.29
AT4G17950.1 Thale cress nucleus 32.74 29.16
Bra025718.1-P Field mustard nucleus, plastid 22.51 28.95
HORVU1Hr1G049980.12 Barley nucleus 34.27 28.88
CDY68252 Canola nucleus 21.74 28.62
CDY26691 Canola cytosol, plastid 22.76 28.62
Bra021027.1-P Field mustard nucleus 29.41 28.05
CDY08882 Canola nucleus 31.2 28.05
Solyc08g008030.2.1 Tomato nucleus 24.81 28.03
CDY01506 Canola nucleus 21.23 27.57
CDX76549 Canola nucleus 30.95 27.5
Solyc06g035430.2.1 Tomato nucleus 24.3 27.46
Bra013270.1-P Field mustard nucleus 29.16 26.76
Solyc09g008940.2.1 Tomato nucleus 28.13 26.38
Solyc12g019430.1.1 Tomato cytosol, plastid, vacuole 12.28 25.0
Solyc11g006190.1.1 Tomato nucleus 21.23 24.63
Protein Annotations
Gene3D:3.30.1330.80MapMan:35.1InterPro:AT_hook_DNA-bd_motifGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:IPR005175UniProt:K4CII2PFAM:PF03479InterPro:PPC_domPFscan:PS51742
PANTHER:PTHR31500PANTHER:PTHR31500:SF44SMART:SM00384SUPFAM:SSF117856EnsemblPlantsGene:Solyc08g006950.2EnsemblPlants:Solyc08g006950.2.1
UniParc:UPI000276C247SEG:seg::::
Description
No Description!
Coordinates
chr8:-:1513125..1516472
Molecular Weight (calculated)
40211.5 Da
IEP (calculated)
7.025
GRAVY (calculated)
-0.272
Length
391 amino acids
Sequence
(BLAST)
001: MDSEESPFAH HPSQFQLPPL PPLSHGTMGV EPPTPPPPPP QFQPIQQDQL NQFVMPLTVV PLPPEHQLSF QFPFNSVPDQ NPNPIFVDDG SSSAAAGAGA
101: GLAAGAVSGA VAGAKKKRGR PRKNKTDGNN VSGVSATQIP VNQANSGVGG VNEAGSSSGK PSSKKVRGRP PGKKTKKEAL GTVGYGFTPY VMPVHTGDDI
201: ASKIVNFSLQ GPPVVCILTA TGVVSSVTLK QAVQGGDTVT YEGRFNIISL GGSFSLSEIN GNRTRTGGIG VALSGPDGRV LGGIISGMLI AATPGQLVLG
301: TFTPEKENRV FEAPCSTPPT NVVNVGAPVA ETNAPSPGAS SKSVDENVGS PLINEAGLFG DAAQTMHNAA QTIHNDPQPM HGMSTYWGHE M
Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.