Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075370 | Potato | nucleus | 94.4 | 94.13 |
| VIT_18s0122g00700.t01 | Wine grape | nucleus | 58.54 | 59.21 |
| GSMUA_Achr3P03710_001 | Banana | nucleus | 57.14 | 55.89 |
| GSMUA_Achr6P03420_001 | Banana | nucleus | 56.3 | 55.83 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 40.9 | 55.73 |
| CDX84679 | Canola | nucleus | 40.9 | 55.73 |
| Bra022946.1-P | Field mustard | nucleus | 40.62 | 55.34 |
| GSMUA_Achr7P20540_001 | Banana | nucleus | 43.14 | 52.56 |
| Os08t0512400-02 | Rice | nucleus | 51.26 | 51.69 |
| GSMUA_Achr9P12360_001 | Banana | extracellular, vacuole | 57.98 | 50.86 |
| AT2G33620.2 | Thale cress | nucleus | 49.3 | 50.14 |
| KXG25625 | Sorghum | nucleus | 51.82 | 49.6 |
| Os09t0491708-01 | Rice | nucleus | 49.58 | 49.3 |
| OQU89696 | Sorghum | nucleus | 51.82 | 48.56 |
| TraesCS7B01G143000.1 | Wheat | nucleus | 49.02 | 48.48 |
| TraesCS7D01G247300.2 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 49.86 | 48.11 |
| TraesCS7A01G248500.1 | Wheat | nucleus | 49.86 | 48.11 |
| HORVU7Hr1G051150.4 | Barley | nucleus | 49.3 | 47.96 |
| Zm00001d052901_P002 | Maize | nucleus | 49.02 | 47.43 |
| Bra021865.1-P | Field mustard | nucleus | 45.66 | 46.57 |
| Solyc02g038760.2.1 | Tomato | nucleus | 42.3 | 46.32 |
| GSMUA_Achr5P23820_001 | Banana | cytosol, nucleus, plasma membrane | 53.22 | 45.13 |
| CDY37704 | Canola | nucleus | 46.22 | 44.0 |
| Zm00001d031481_P001 | Maize | nucleus, peroxisome, plasma membrane, plastid | 50.7 | 43.93 |
| Zm00001d006034_P003 | Maize | nucleus | 52.1 | 43.26 |
| Solyc04g053090.1.1 | Tomato | plastid | 20.45 | 43.2 |
| OQU76344 | Sorghum | nucleus | 43.42 | 42.82 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 47.62 | 42.71 |
| HORVU5Hr1G073550.1 | Barley | nucleus, peroxisome, plastid | 46.5 | 42.35 |
| KRH60876 | Soybean | nucleus | 42.02 | 42.02 |
| Zm00001d037425_P001 | Maize | nucleus | 41.74 | 41.74 |
| KRH51558 | Soybean | nucleus | 41.46 | 41.69 |
| Solyc04g053100.1.1 | Tomato | plastid | 18.77 | 40.36 |
| Solyc08g079630.2.1 | Tomato | nucleus | 34.73 | 38.63 |
| Solyc08g007530.2.1 | Tomato | nucleus | 35.29 | 38.41 |
| Os06t0326000-01 | Rice | nucleus | 39.78 | 37.57 |
| Solyc03g007150.2.1 | Tomato | nucleus | 33.33 | 36.62 |
| Solyc01g091370.2.1 | Tomato | nucleus | 32.49 | 36.48 |
| Solyc01g094460.2.1 | Tomato | nucleus | 33.89 | 35.69 |
| Solyc12g019430.1.1 | Tomato | cytosol, plastid, vacuole | 18.77 | 34.9 |
| Solyc08g080960.2.1 | Tomato | nucleus | 32.49 | 34.73 |
| Solyc08g077030.2.1 | Tomato | nucleus | 39.78 | 34.72 |
| TraesCS7A01G134300.1 | Wheat | cytosol | 19.05 | 34.52 |
| Solyc08g008030.2.1 | Tomato | nucleus | 32.77 | 33.81 |
| Solyc02g082300.2.1 | Tomato | nucleus, plastid | 24.65 | 33.72 |
| Solyc06g035430.2.1 | Tomato | nucleus | 32.21 | 33.24 |
| TraesCS7B01G035400.1 | Wheat | cytosol | 18.49 | 33.0 |
| TraesCS7D01G133700.1 | Wheat | cytosol | 19.61 | 30.43 |
| HORVU7Hr1G027950.1 | Barley | extracellular, mitochondrion, plasma membrane | 20.17 | 30.38 |
| Solyc11g006190.1.1 | Tomato | nucleus | 28.29 | 29.97 |
| Solyc08g006950.2.1 | Tomato | nucleus | 32.77 | 29.92 |
| TraesCS7B01G035900.1 | Wheat | nucleus | 28.85 | 28.37 |
| TraesCS7D01G134100.1 | Wheat | nucleus | 28.57 | 28.18 |
| Solyc09g008940.2.1 | Tomato | nucleus | 31.37 | 26.86 |
| HORVU7Hr1G028110.15 | Barley | plasma membrane | 27.17 | 26.15 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| InterPro:IPR005175 | UniProt:K4DH43 | PFAM:PF03479 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF0 | SMART:SM00384 | SUPFAM:SSF117856 | EnsemblPlantsGene:Solyc12g094710.1 | EnsemblPlants:Solyc12g094710.1.1 | UniParc:UPI00027698A6 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:64849884..64853486
Molecular Weight (calculated)
36079.4 Da
IEP (calculated)
10.025
GRAVY (calculated)
-0.354
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVTEAGSGV MTSRDHFSVA GVQNSPSNVP ATTPVVQNMH LGYRDENTAV FAPPPYQSAE GSAGAGTSML QNLNNNSSEP MKRKRGRPRK YGPDGSMALG
101: LNPAASPVGG GSLGGSLSPR DPGNSAGAQM HSGGPGSPNS SKKGRGRPPG SGKKQQMDNL GSTGFGFTPH IIAVKPGEDV AYKIMSFSQN GPRAVCILSA
201: SGAISYVTLK QTATSGGTAT YEGRFEILSL SGSFMLSDIG GQQSRTGGLS VSLAGSDGRI LGGCVAGVLT AASPVQVIVG SFIADGRKEP KTSNHFEVLP
301: APLNANLGVG GGLTGANSPP SRGTYSESSG GPGSPINQRG PVCTNDNLQG ISSMPWK
101: LNPAASPVGG GSLGGSLSPR DPGNSAGAQM HSGGPGSPNS SKKGRGRPPG SGKKQQMDNL GSTGFGFTPH IIAVKPGEDV AYKIMSFSQN GPRAVCILSA
201: SGAISYVTLK QTATSGGTAT YEGRFEILSL SGSFMLSDIG GQQSRTGGLS VSLAGSDGRI LGGCVAGVLT AASPVQVIVG SFIADGRKEP KTSNHFEVLP
301: APLNANLGVG GGLTGANSPP SRGTYSESSG GPGSPINQRG PVCTNDNLQG ISSMPWK
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.