Factsheet for GSMUA_Achr5P23820_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P03420_001	Banana	nucleus	63.42	74.17
GSMUA_Achr3P03710_001	Banana	nucleus	58.19	67.12
VIT_18s0122g00700.t01	Wine grape	nucleus	55.34	66.01
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	62.47	64.62
Os09t0491708-01	Rice	nucleus	49.88	58.5
Os08t0512400-02	Rice	nucleus	48.22	57.34
CDX79537	Canola	mitochondrion, nucleus, plastid	35.63	57.25
CDX84679	Canola	nucleus	35.63	57.25
Bra022946.1-P	Field mustard	nucleus	35.39	56.87
GSMUA_Achr7P20540_001	Banana	nucleus	39.19	56.31
KXG25625	Sorghum	nucleus	49.88	56.3
OQU89696	Sorghum	nucleus	49.64	54.86
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	24.47	54.21
PGSC0003DMT400075370	Potato	nucleus	45.61	53.63
AT2G33620.2	Thale cress	nucleus	44.66	53.56
Solyc12g094710.1.1	Tomato	nucleus	45.13	53.22
TraesCS7A01G248500.1	Wheat	nucleus	46.56	52.97
HORVU7Hr1G051150.4	Barley	nucleus	46.08	52.86
TraesCS7D01G247300.2	Wheat	mitochondrion, nucleus, peroxisome, plastid	46.32	52.7
TraesCS7B01G143000.1	Wheat	nucleus	44.66	52.08
Zm00001d052901_P002	Maize	nucleus	45.37	51.76
Bra021865.1-P	Field mustard	nucleus	42.99	51.71
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	40.86	48.86
CDY37704	Canola	nucleus	43.47	48.8
CDY23720	Canola	extracellular, plasma membrane, vacuole	45.61	48.24
Zm00001d006034_P003	Maize	nucleus	49.17	48.14
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	47.03	48.06
GSMUA_Achr2P09840_001	Banana	nucleus	39.67	46.78
KRH60876	Soybean	nucleus	38.72	45.66
KRH51558	Soybean	nucleus	38.48	45.63
HORVU5Hr1G073550.1	Barley	nucleus, peroxisome, plastid	42.28	45.41
OQU76344	Sorghum	nucleus	38.95	45.3
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	20.67	44.39
Zm00001d037425_P001	Maize	nucleus	37.53	44.26
Os06t0326000-01	Rice	nucleus	38.24	42.59
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	33.73	42.26
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	35.87	41.26
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	35.63	40.87
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	32.3	40.84
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	31.83	39.88
GSMUA_Achr1P19840_001	Banana	nucleus	34.68	38.32
GSMUA_Achr8P11400_001	Banana	nucleus	31.12	37.86
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	34.2	37.7
GSMUA_Achr11P...	Banana	nucleus	32.78	36.8
GSMUA_Achr11P...	Banana	nucleus	31.83	36.12
TraesCS7A01G134300.1	Wheat	cytosol	16.15	34.52
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	31.59	34.1
GSMUA_Achr4P30000_001	Banana	nucleus	26.37	34.05
TraesCS7B01G035400.1	Wheat	cytosol	15.91	33.5
HORVU7Hr1G027950.1	Barley	extracellular, mitochondrion, plasma membrane	17.81	31.65
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	14.01	30.73
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	23.28	30.06
TraesCS7D01G133700.1	Wheat	cytosol	16.39	30.0
TraesCS7D01G134100.1	Wheat	nucleus	25.65	29.83
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	34.2	29.75
TraesCS7B01G035900.1	Wheat	nucleus	25.18	29.2
HORVU7Hr1G028110.15	Barley	plasma membrane	24.23	27.49

Protein Annotations

EnsemblPlants:GSMUA_Achr5P23820_001	EnsemblPlants:GSMUA_Achr5T23820_001	EnsemblPlantsGene:GSMUA_Achr5G23820_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF0	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI0002964B13	UniProt:M0T157	MapMan:35.1	:	:	:

Description

AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G23820_001]

Coordinates

chr5:+:25420829..25427738

Molecular Weight (calculated)

42848.0 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.169

Length

421 amino acids

Sequence
(BLAST)

001: MLSTIQNASI FLSCPAPPPP PIFHHQREEE QHDAQLNKGD VVEWCCSRVR IVLVGNGVWS SVLSCMEVRS EQGFMASRDS SSFNVSLQTS PLQPQPLEMQ
101: SMRLAYTADG TAIYKPISSS SPAPQPPPTY LGGGGGSIAT GDGGTASAAV PPHGLNINVG EPVKKKRGRP RKYGPDGLAL TSLATAASVS SSSPTAGTGH
201: LAPSGSADAK KKPKGRPPGS SKKLQMGVLG SAGTGFTPHI ITVMAGEDVS SKIMSLSQHG SRAICILSAN GAISNVTLRQ PATSGGTVTY EGRFEILSLS
301: GSFLLSESGG QRSRTGGLSV SLAGPDGRVL GGGVAGLLMA ASPVQVVVGS FIPVVKKESK QINPIDLASA KAAPGGMTGA SSPPSRGSLS ESSGGPGSPF
401: NQSSGACNNS NQHGLANILW K

Best Arabidopsis Sequence Match ( AT2G33620.3 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.