Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G134100.1 | Wheat | nucleus | 82.48 | 84.53 |
| TraesCS7B01G035900.1 | Wheat | nucleus | 81.67 | 83.47 |
| HORVU7Hr1G027950.1 | Barley | extracellular, mitochondrion, plasma membrane | 40.7 | 63.71 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 21.29 | 30.15 |
| CDX84679 | Canola | nucleus | 21.29 | 30.15 |
| Bra022946.1-P | Field mustard | nucleus | 21.02 | 29.77 |
| VIT_18s0122g00700.t01 | Wine grape | nucleus | 28.3 | 29.75 |
| GSMUA_Achr3P03710_001 | Banana | nucleus | 28.57 | 29.04 |
| OQU76344 | Sorghum | nucleus | 28.3 | 29.01 |
| GSMUA_Achr6P03420_001 | Banana | nucleus | 28.03 | 28.89 |
| Zm00001d037425_P001 | Maize | nucleus | 27.76 | 28.85 |
| Os06t0326000-01 | Rice | nucleus | 28.57 | 28.04 |
| PGSC0003DMT400075370 | Potato | nucleus | 26.68 | 27.65 |
| AT2G33620.2 | Thale cress | nucleus | 26.15 | 27.64 |
| HORVU7Hr1G051150.4 | Barley | nucleus | 26.95 | 27.25 |
| Solyc12g094710.1.1 | Tomato | nucleus | 26.15 | 27.17 |
| GSMUA_Achr9P12360_001 | Banana | extracellular, vacuole | 29.38 | 26.78 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 22.1 | 26.71 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 12.94 | 25.4 |
| Bra021865.1-P | Field mustard | nucleus | 23.45 | 24.86 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 15.63 | 24.58 |
| HORVU2Hr1G123730.3 | Barley | plastid | 13.75 | 24.29 |
| GSMUA_Achr5P23820_001 | Banana | cytosol, nucleus, plasma membrane | 27.49 | 24.23 |
| KRH51558 | Soybean | nucleus | 23.18 | 24.23 |
| KRH60876 | Soybean | nucleus | 23.18 | 24.09 |
| CDY37704 | Canola | nucleus | 23.72 | 23.47 |
| HORVU7Hr1G075040.1 | Barley | plastid | 24.8 | 23.41 |
| HORVU5Hr1G073550.1 | Barley | nucleus, peroxisome, plastid | 24.53 | 23.21 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 23.72 | 22.11 |
| PGSC0003DMT400075372 | Potato | cytosol, nucleus, peroxisome | 19.41 | 22.09 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 18.33 | 19.48 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 23.72 | 18.97 |
| HORVU5Hr1G041290.4 | Barley | cytosol, nucleus, peroxisome | 18.87 | 18.77 |
| Solyc12g019430.1.1 | Tomato | cytosol, plastid, vacuole | 9.16 | 17.71 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G028110.15 | EnsemblPlantsGene:HORVU7Hr1G028110 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI000B47EEE5 | UniProt:A0A287VUK1 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:50282649..50295745
Molecular Weight (calculated)
38263.7 Da
IEP (calculated)
8.696
GRAVY (calculated)
-0.169
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLQSCTEL SRKIEGGVFW LLVLCLRGEI EGGAMSEAAG EAAYGAGMPK SLLHPQPQPI VDDAHEGSAS YSAPRSSCPM VGNGVVHVPA MSASSQPPRQ
101: KRGRPRKNTP DGTKLPAIFP AAYPIGLVAS PTPALPPGFT LGLWGVGVVR PQAPPALPSP LPPPPFENSK QRAKKKRVWP PSSTTSKKQR ELAVAEPGAT
201: GLVPQVITIQ GGEDVAAKVM SYCGNGWAVF IMSAEGAVRN VTLKQPASSC GTVIYEGYFD IVSLSGVYVP SKSNGLSTLK GGFSISLVGH DGRLFGGGLA
301: GPLIAASPVQ VVIGRFAADE KEEIKQDVAS GRVAADEKEE IKQDVASGTP GATTPTAGPN EPSSGPGSPS N
101: KRGRPRKNTP DGTKLPAIFP AAYPIGLVAS PTPALPPGFT LGLWGVGVVR PQAPPALPSP LPPPPFENSK QRAKKKRVWP PSSTTSKKQR ELAVAEPGAT
201: GLVPQVITIQ GGEDVAAKVM SYCGNGWAVF IMSAEGAVRN VTLKQPASSC GTVIYEGYFD IVSLSGVYVP SKSNGLSTLK GGFSISLVGH DGRLFGGGLA
301: GPLIAASPVQ VVIGRFAADE KEEIKQDVAS GRVAADEKEE IKQDVASGTP GATTPTAGPN EPSSGPGSPS N
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.