Factsheet for GSMUA_Achr6P03420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P03710_001	Banana	nucleus	71.94	70.96
VIT_18s0122g00700.t01	Wine grape	nucleus	64.44	65.72
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	73.33	64.86
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	74.17	63.42
CDX79537	Canola	mitochondrion, nucleus, plastid	44.72	61.45
CDX84679	Canola	nucleus	44.72	61.45
Bra022946.1-P	Field mustard	nucleus	44.44	61.07
GSMUA_Achr7P20540_001	Banana	nucleus	49.44	60.75
Os09t0491708-01	Rice	nucleus	60.0	60.17
KXG25625	Sorghum	nucleus	61.94	59.79
Os08t0512400-02	Rice	nucleus	58.33	59.32
PGSC0003DMT400075370	Potato	nucleus	56.67	56.98
Zm00001d052901_P002	Maize	nucleus	58.33	56.91
OQU89696	Sorghum	nucleus	59.72	56.43
Solyc12g094710.1.1	Tomato	nucleus	55.83	56.3
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	28.89	54.74
AT2G33620.2	Thale cress	nucleus	53.33	54.7
TraesCS7A01G248500.1	Wheat	nucleus	55.56	54.05
TraesCS7D01G247300.2	Wheat	mitochondrion, nucleus, peroxisome, plastid	55.56	54.05
HORVU7Hr1G051150.4	Barley	nucleus	55.0	53.95
TraesCS7B01G143000.1	Wheat	nucleus	53.61	53.46
Bra021865.1-P	Field mustard	nucleus	50.83	52.29
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	58.89	51.46
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	49.17	50.28
Zm00001d006034_P003	Maize	nucleus	59.17	49.53
CDY37704	Canola	nucleus	50.83	48.8
KRH51558	Soybean	nucleus	47.78	48.45
KRH60876	Soybean	nucleus	47.78	48.18
HORVU5Hr1G073550.1	Barley	nucleus, peroxisome, plastid	52.22	47.96
OQU76344	Sorghum	nucleus	47.78	47.51
GSMUA_Achr2P09840_001	Banana	nucleus	46.39	46.78
Zm00001d037425_P001	Maize	nucleus	46.39	46.78
CDY23720	Canola	extracellular, plasma membrane, vacuole	51.67	46.73
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	41.94	44.94
Os06t0326000-01	Rice	nucleus	46.67	44.44
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	24.17	44.39
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	43.61	42.9
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	38.89	42.04
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	42.22	41.42
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	38.06	40.77
GSMUA_Achr8P11400_001	Banana	nucleus	37.78	39.31
GSMUA_Achr1P19840_001	Banana	nucleus	41.39	39.11
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	39.72	37.43
GSMUA_Achr4P30000_001	Banana	nucleus	33.61	37.12
GSMUA_Achr11P...	Banana	nucleus	38.06	36.93
GSMUA_Achr11P...	Banana	nucleus	38.33	36.8
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	38.06	35.13
TraesCS7A01G134300.1	Wheat	cytosol	19.17	35.03
TraesCS7B01G035400.1	Wheat	cytosol	19.17	34.5
HORVU7Hr1G027950.1	Barley	extracellular, mitochondrion, plasma membrane	20.83	31.65
TraesCS7D01G134100.1	Wheat	nucleus	31.11	30.94
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	41.39	30.79
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	16.39	30.73
TraesCS7D01G133700.1	Wheat	cytosol	19.44	30.43
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	27.5	30.37
TraesCS7B01G035900.1	Wheat	nucleus	30.0	29.75
HORVU7Hr1G028110.15	Barley	plasma membrane	28.89	28.03

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr6G03420_001	EnsemblPlants:GSMUA_Achr6P03420_001	EnsemblPlants:GSMUA_Achr6T03420_001	InterPro:IPR005175	UniProt:M0T3U0
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF0	SMART:SM00384
SUPFAM:SSF117856	UniParc:UPI00029490B8	SEG:seg	:	:	:

Description

AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G03420_001]

Coordinates

chr6:+:2355509..2360290

Molecular Weight (calculated)

36326.2 Da

IEP (calculated)

10.742

GRAVY (calculated)

-0.280

Length

360 amino acids

Sequence
(BLAST)

001: MEVRLEQGTM ASRETSSLFF GVQKSPVQSQ PPAMQSMRLA YVADGTAIFK PISSSSPAPP RPSPPPYQGG GDGGENAGAG DGSSAVITPH GLNINVGEPV
101: KRKRGRPRKY GPHGLALNPL STAASVLPVA GAFSPPAGMA NPADATKKPR GRPPGSGNKK QKLGALGSSG TGFTPHVITV TAGEDVFSKI MSFSQHGSRA
201: ICILSANGAI SNVTLRQPAT SGGTVTYEGR FEILSLSGSF LLSESGGQRS RTGGLSVSLA GPDGRVLGGG VAGLLMAASP VQVVMGSFIP DGKKGSKQIN
301: PVDPTSAPGK LAADGMTGAS SPLSRGTMSE SSGGPGSPLN QSTPVCNNSN QQGLSNIPWK

Best Arabidopsis Sequence Match ( AT2G33620.3 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.