Factsheet for PGSC0003DMT400075370

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g094710.1.1	Tomato	nucleus	94.13	94.4
VIT_18s0122g00700.t01	Wine grape	nucleus	60.06	60.91
GSMUA_Achr3P03710_001	Banana	nucleus	58.66	57.53
CDX79537	Canola	mitochondrion, nucleus, plastid	41.62	56.87
GSMUA_Achr6P03420_001	Banana	nucleus	56.98	56.67
Bra022946.1-P	Field mustard	nucleus	41.34	56.49
CDX84679	Canola	nucleus	41.34	56.49
GSMUA_Achr7P20540_001	Banana	nucleus	44.13	53.92
Os08t0512400-02	Rice	nucleus	52.51	53.11
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	59.22	52.09
Os09t0491708-01	Rice	nucleus	51.12	50.97
KXG25625	Sorghum	nucleus	52.79	50.67
AT2G33620.2	Thale cress	nucleus	48.88	49.86
OQU89696	Sorghum	nucleus	52.79	49.61
TraesCS7B01G143000.1	Wheat	nucleus	50.0	49.58
TraesCS7A01G248500.1	Wheat	nucleus	51.12	49.46
TraesCS7D01G247300.2	Wheat	mitochondrion, nucleus, peroxisome, plastid	51.12	49.46
HORVU7Hr1G051150.4	Barley	nucleus	50.56	49.32
Zm00001d052901_P002	Maize	nucleus	50.56	49.05
Bra021865.1-P	Field mustard	nucleus	47.21	48.29
PGSC0003DMT400059682	Potato	nucleus	42.74	46.93
PGSC0003DMT400045285	Potato	cytosol	18.99	45.95
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	53.63	45.61
CDY37704	Canola	nucleus	47.49	45.33
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	51.96	45.15
CDY23720	Canola	extracellular, plasma membrane, vacuole	49.16	44.22
Zm00001d006034_P003	Maize	nucleus	53.07	44.19
KRH60876	Soybean	nucleus	43.3	43.42
OQU76344	Sorghum	nucleus	43.85	43.37
HORVU5Hr1G073550.1	Barley	nucleus, peroxisome, plastid	47.21	43.11
KRH51558	Soybean	nucleus	42.74	43.1
PGSC0003DMT400045147	Potato	plastid	38.83	42.12
Zm00001d037425_P001	Maize	nucleus	41.9	42.02
PGSC0003DMT400032575	Potato	plastid	35.75	39.51
PGSC0003DMT400010017	Potato	plastid	34.92	39.19
Os06t0326000-01	Rice	nucleus	40.78	38.62
PGSC0003DMT400035486	Potato	nucleus, plastid	27.09	37.16
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	34.08	36.75
TraesCS7A01G134300.1	Wheat	cytosol	19.83	36.04
PGSC0003DMT400071865	Potato	plastid	30.73	35.71
PGSC0003DMT400000467	Potato	nucleus	33.8	35.69
PGSC0003DMT400052826	Potato	nucleus	35.2	35.0
TraesCS7B01G035400.1	Wheat	cytosol	19.55	35.0
PGSC0003DMT400079651	Potato	nucleus	33.8	34.97
PGSC0003DMT400014926	Potato	plastid	32.4	33.62
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	30.45	33.44
HORVU7Hr1G027950.1	Barley	extracellular, mitochondrion, plasma membrane	21.51	32.49
PGSC0003DMT400073848	Potato	nucleus	29.33	31.82
TraesCS7D01G133700.1	Wheat	cytosol	20.39	31.74
PGSC0003DMT400031843	Potato	plastid	31.84	29.69
TraesCS7D01G134100.1	Wheat	nucleus	29.05	28.73
TraesCS7B01G035900.1	Wheat	nucleus	29.05	28.65
PGSC0003DMT400007056	Potato	nucleus	32.12	28.33
HORVU7Hr1G028110.15	Barley	plasma membrane	27.65	26.68

Protein Annotations

EntrezGene:102603005	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	UniProt:M1CV16	PFAM:PF03479	EnsemblPlantsGene:PGSC0003DMG401029312
PGSC:PGSC0003DMG401029312	EnsemblPlants:PGSC0003DMT400075370	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF0
SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI000296D0C2	RefSeq:XP_006342527.1	RefSeq:XP_006342528.1	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401029312]

Coordinates

chr12:-:57559716..57563991

Molecular Weight (calculated)

36056.4 Da

IEP (calculated)

9.969

GRAVY (calculated)

-0.334

Length

358 amino acids

Sequence
(BLAST)

001: MSVSEAGSGV MTSRDHFSVA GVQNSPANVP ATTPVVQNMH MGYRDENTAV FAPPPYQSAE GSAGAGTVML QNLNNNSSEP MKRKRGRPRK YGPDGSMALG
101: LNPAGSPPVA GGPLGGSLSP RDPGNSAGAQ MLSGGPASPN SLKKGRGRPP GSGKKQQMDN HGSTGFGFTP HIIAVKTGED VAYKIMSFSQ NGPRAVCILS
201: ASGAISNVTL RQTATSGGTA TYEGRFDILS LSGSFMLSDI GGQQSRTGGL SVSLAGSDGR ILGGCVAGVL TAASPVQVIV GSFIADGRKE PKTANHFEAS
301: PAPLNANLGV GGGLTGANSP PSRGTYSESS GGPGSPLNQS GPVCTNDNLQ GISSMPWK

Best Arabidopsis Sequence Match ( AT2G33620.3 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.