Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g091370.2.1 | Tomato | nucleus | 92.17 | 96.23 |
| VIT_15s0048g00870.t01 | Wine grape | nucleus | 57.83 | 57.48 |
| KRH76268 | Soybean | cytosol, nucleus, plastid | 56.33 | 54.05 |
| KRH00569 | Soybean | cytosol, peroxisome, plastid | 54.52 | 53.55 |
| KRH65263 | Soybean | cytosol, nucleus, plastid | 55.42 | 53.18 |
| PGSC0003DMT400010017 | Potato | plastid | 50.9 | 52.98 |
| KRH40594 | Soybean | nucleus | 53.31 | 52.52 |
| PGSC0003DMT400032575 | Potato | plastid | 50.6 | 51.85 |
| CDY07239 | Canola | plasma membrane | 34.94 | 50.22 |
| PGSC0003DMT400045285 | Potato | cytosol | 22.29 | 50.0 |
| AT4G00200.2 | Thale cress | nucleus | 46.39 | 48.43 |
| Bra037321.1-P | Field mustard | nucleus | 45.18 | 47.47 |
| CDY07238 | Canola | nucleus | 45.18 | 47.47 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 33.73 | 47.46 |
| PGSC0003DMT400079651 | Potato | nucleus | 46.39 | 44.51 |
| PGSC0003DMT400071865 | Potato | plastid | 40.06 | 43.18 |
| Zm00001d015090_P001 | Maize | extracellular | 33.73 | 42.26 |
| KXG29351 | Sorghum | plastid | 43.37 | 38.4 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 44.28 | 37.6 |
| PGSC0003DMT400000467 | Potato | nucleus | 37.95 | 37.17 |
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 44.28 | 37.12 |
| TraesCS6D01G076900.1 | Wheat | nucleus | 43.67 | 36.62 |
| PGSC0003DMT400014926 | Potato | plastid | 35.54 | 34.2 |
| PGSC0003DMT400075370 | Potato | nucleus | 36.75 | 34.08 |
| Os02t0125200-00 | Rice | mitochondrion | 36.75 | 33.24 |
| PGSC0003DMT400059682 | Potato | nucleus | 32.53 | 33.13 |
| PGSC0003DMT400035486 | Potato | nucleus, plastid | 24.7 | 31.42 |
| PGSC0003DMT400045147 | Potato | plastid | 30.72 | 30.91 |
| PGSC0003DMT400052826 | Potato | nucleus | 32.53 | 30.0 |
| PGSC0003DMT400031843 | Potato | plastid | 34.64 | 29.95 |
| PGSC0003DMT400073848 | Potato | nucleus | 28.92 | 29.09 |
| PGSC0003DMT400007056 | Potato | nucleus | 34.34 | 28.08 |
| PGSC0003DMT400075372 | Potato | cytosol, nucleus, peroxisome | 27.41 | 27.91 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400033227 | EnsemblPlantsGene:PGSC0003DMG400012760 | EntrezGene:102580329 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31500 | PANTHER:PTHR31500:SF15 | PFAM:PF03479 | PFscan:PS51742 | PGSC:PGSC0003DMG400012760 | RefSeq:XP_006339435.1 |
| RefSeq:XP_015166773.1 | RefSeq:XP_015166775.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0002968C52 | UniProt:M1AYS7 |
| MapMan:35.1 | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012760]
Coordinates
chr1:-:70751585..70756876
Molecular Weight (calculated)
34683.2 Da
IEP (calculated)
10.103
GRAVY (calculated)
-0.260
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MESREAMNAG VTVIAPEAPS NYHMASRTES TPLPPGTLAV ITPPVATAFP ISSEKKKRGR PRKYGPDGAV ARTISPMPIS ASAPPTSGNF LSEKVSVARP
101: ASEKKPRNKV GAENLGEWIS CSTGGNFLPH MITVEAGEDV TMKIISFSQQ GPRAICIISA VGLISNVTLR QPNSSGGTLT YEGRFEILSL SGSFTPTEFG
201: GSRTTSRTGG MSISLASPDG RVVGGTLAGL LIAASPVQVV VGSFLPSNYQ EAKPKKQKAE PKAIAYGTLS PAAPHSSNME PRSSNAHTVN VPAAGTQNVI
301: SSSIQPNHWT TMPSVQDSRK STTDINISLQ GE
101: ASEKKPRNKV GAENLGEWIS CSTGGNFLPH MITVEAGEDV TMKIISFSQQ GPRAICIISA VGLISNVTLR QPNSSGGTLT YEGRFEILSL SGSFTPTEFG
201: GSRTTSRTGG MSISLASPDG RVVGGTLAGL LIAASPVQVV VGSFLPSNYQ EAKPKKQKAE PKAIAYGTLS PAAPHSSNME PRSSNAHTVN VPAAGTQNVI
301: SSSIQPNHWT TMPSVQDSRK STTDINISLQ GE
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.