Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400000467 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63480.1 | PGSC0003DMT400000467 | AT3G61310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g008030.2.1 | Tomato | nucleus | 95.94 | 95.66 |
| PGSC0003DMT400031843 | Potato | plastid | 74.2 | 66.67 |
| KRH05193 | Soybean | plastid | 26.09 | 61.22 |
| VIT_02s0025g03580.t01 | Wine grape | nucleus | 58.55 | 58.38 |
| KRH27929 | Soybean | nucleus | 53.91 | 52.84 |
| KRH77536 | Soybean | nucleus | 53.62 | 51.82 |
| KRH59866 | Soybean | nucleus | 52.46 | 51.42 |
| KRH41165 | Soybean | nucleus | 52.17 | 51.14 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 46.09 | 47.75 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 45.51 | 45.38 |
| PGSC0003DMT400000467 | Potato | nucleus | 44.35 | 45.13 |
| Bra025511.1-P | Field mustard | nucleus | 36.23 | 45.13 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 46.38 | 44.2 |
| CDY45364 | Canola | nucleus | 46.38 | 43.6 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 24.35 | 42.86 |
| Bra027801.1-P | Field mustard | nucleus | 46.38 | 42.67 |
| CDY25500 | Canola | nucleus | 45.22 | 42.16 |
| AT1G63470.1 | Thale cress | nucleus | 45.8 | 41.8 |
| GSMUA_Achr11P... | Banana | nucleus | 44.93 | 41.78 |
| GSMUA_Achr11P... | Banana | nucleus | 44.93 | 41.33 |
| AT1G63480.1 | Thale cress | nucleus | 43.19 | 41.27 |
| Bra027642.1-P | Field mustard | nucleus | 45.22 | 40.94 |
| CDY39751 | Canola | nucleus | 44.64 | 40.31 |
| CDY46385 | Canola | nucleus | 44.35 | 40.05 |
| HORVU2Hr1G123730.3 | Barley | plastid | 24.35 | 40.0 |
| CDY34355 | Canola | nucleus | 43.77 | 39.95 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 37.39 | 39.57 |
| Zm00001d018515_P002 | Maize | nucleus | 42.32 | 37.63 |
| Os02t0824300-01 | Rice | nucleus | 42.9 | 37.56 |
| PGSC0003DMT400045285 | Potato | cytosol | 15.94 | 37.16 |
| PGSC0003DMT400032575 | Potato | plastid | 34.78 | 37.04 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 42.9 | 37.0 |
| OQU85994 | Sorghum | nucleus | 42.9 | 36.91 |
| PGSC0003DMT400010017 | Potato | plastid | 33.62 | 36.36 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 31.88 | 35.83 |
| PGSC0003DMT400033227 | Potato | cytosol, nucleus, peroxisome | 34.2 | 35.54 |
| PGSC0003DMT400079651 | Potato | nucleus | 33.62 | 33.53 |
| PGSC0003DMT400059682 | Potato | nucleus | 30.72 | 32.52 |
| PGSC0003DMT400075370 | Potato | nucleus | 33.62 | 32.4 |
| PGSC0003DMT400071865 | Potato | plastid | 28.7 | 32.14 |
| PGSC0003DMT400035486 | Potato | nucleus, plastid | 24.06 | 31.8 |
| PGSC0003DMT400045147 | Potato | plastid | 29.86 | 31.21 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 36.52 | 31.19 |
| PGSC0003DMT400073848 | Potato | nucleus | 29.28 | 30.61 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 35.65 | 30.52 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 35.65 | 30.37 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 41.16 | 30.15 |
| PGSC0003DMT400052826 | Potato | nucleus | 31.3 | 30.0 |
| Os04t0683900-01 | Rice | nucleus | 35.07 | 28.88 |
| KXG27470 | Sorghum | nucleus | 34.2 | 28.23 |
| Zm00001d026652_P001 | Maize | plastid | 32.46 | 28.21 |
| TraesCS6A01G403700.1 | Wheat | nucleus | 42.61 | 27.68 |
| PGSC0003DMT400075372 | Potato | cytosol, nucleus, peroxisome | 24.64 | 26.07 |
| Zm00001d001784_P002 | Maize | nucleus | 32.75 | 25.98 |
| PGSC0003DMT400007056 | Potato | nucleus | 30.43 | 25.86 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 26.09 | 25.79 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014926 | EnsemblPlantsGene:PGSC0003DMG402005821 | EntrezGene:102594241 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31500 | PANTHER:PTHR31500:SF9 | PFAM:PF03479 | PFscan:PS51742 | PGSC:PGSC0003DMG402005821 | RefSeq:XP_006352274.1 |
| SEG:seg | SUPFAM:SSF117856 | UniParc:UPI000294F048 | UniProt:M1A542 | MapMan:35.1 | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402005821]
Coordinates
chr8:-:4842630..4849368
Molecular Weight (calculated)
35348.8 Da
IEP (calculated)
10.136
GRAVY (calculated)
-0.318
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGREGMVLS GGAAYYLNRG ISGSGSGVGG GSGTPTRVTT PPTYKSLSNP NISVQSNVGG GGTLSSTYQV VENPSPHFSH GINMTVASSV SPGSDPVKKK
101: RGRPRKYGPD GSKMSLGLSP LSSTPSTGSI TPGPKRAKGR PPGSGWKQKL APLGEWMNTS AGLAFTPHVI HISVGEDVAA KLLAFAEQRP RALCVLSASG
201: SLSAVTLRPP TSSGSTVTYE GRFEILCLSG SYLVAESGGP RDRTGGISIS VSSPDGHVLG GAVGGRLIAT SPVQVVVCSF VYGPKVKSKP ETSTKGSDEE
301: SAEKSSIPVN AMSQDPTSNS ATGIWPPISR PELRNSQPEI DLTRG
101: RGRPRKYGPD GSKMSLGLSP LSSTPSTGSI TPGPKRAKGR PPGSGWKQKL APLGEWMNTS AGLAFTPHVI HISVGEDVAA KLLAFAEQRP RALCVLSASG
201: SLSAVTLRPP TSSGSTVTYE GRFEILCLSG SYLVAESGGP RDRTGGISIS VSSPDGHVLG GAVGGRLIAT SPVQVVVCSF VYGPKVKSKP ETSTKGSDEE
301: SAEKSSIPVN AMSQDPTSNS ATGIWPPISR PELRNSQPEI DLTRG
001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
Arabidopsis Description
AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.