Factsheet for Bra025511.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002804.1-P
Bra003446.1-P
Bra006865.1-P
Bra007595.1-P
Bra014444.1-P
Bra014545.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	Bra003446.1-P	AT3G61310.1	21798944
AT1G63480.1	Bra007595.1-P	AT3G61310.1	21798944
AT1G63480.1	Bra014444.1-P	AT3G61310.1	21798944
AT1G63480.1	Bra002804.1-P	AT5G56600.1	21798944
AT1G63480.1	Bra006865.1-P	AT5G56600.1	21798944
AT1G63480.1	Bra014545.1-P	AT5G56600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39751	Canola	nucleus	98.19	71.2
CDY46385	Canola	nucleus	96.75	70.16
KRH05193	Soybean	plastid	28.16	53.06
Bra027642.1-P	Field mustard	nucleus	65.7	47.77
AT1G63480.1	Thale cress	nucleus	61.37	47.09
Bra027801.1-P	Field mustard	nucleus	62.82	46.4
VIT_02s0025g03580.t01	Wine grape	nucleus	49.46	39.6
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	46.93	39.04
KRH27929	Soybean	nucleus	47.65	37.5
Solyc08g080960.2.1	Tomato	nucleus	45.13	37.43
KRH41165	Soybean	nucleus	47.29	37.22
KRH59866	Soybean	nucleus	46.93	36.93
Solyc08g008030.2.1	Tomato	nucleus	45.49	36.42
KRH77536	Soybean	nucleus	46.93	36.41
PGSC0003DMT400014926	Potato	plastid	45.13	36.23
GSMUA_Achr8P11400_001	Banana	nucleus	44.77	35.84
GSMUA_Achr11P...	Banana	nucleus	46.57	34.77
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	24.55	34.69
Bra022946.1-P	Field mustard	nucleus	32.13	33.97
PGSC0003DMT400031843	Potato	plastid	46.57	33.59
GSMUA_Achr4P30000_001	Banana	nucleus	38.99	33.13
Bra014444.1-P	Field mustard	nucleus	38.99	32.43
GSMUA_Achr11P...	Banana	nucleus	43.68	32.27
Bra007595.1-P	Field mustard	nucleus	39.71	32.26
Bra039309.1-P	Field mustard	nucleus	39.71	32.26
TraesCS7A01G565900.1	Wheat	nucleus	35.38	31.92
HORVU2Hr1G123730.3	Barley	plastid	22.74	30.0
Bra003446.1-P	Field mustard	nucleus	35.02	28.61
Bra033121.1-P	Field mustard	nucleus	31.05	27.74
Bra037321.1-P	Field mustard	nucleus	31.41	27.53
Os02t0824300-01	Rice	nucleus	38.99	27.41
Zm00001d018515_P002	Maize	nucleus	38.27	27.32
Bra019359.1-P	Field mustard	nucleus	32.13	27.05
Bra013646.1-P	Field mustard	nucleus	29.24	26.56
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	38.27	26.5
OQU85994	Sorghum	nucleus	37.55	25.94
Bra021865.1-P	Field mustard	nucleus	31.05	24.57
TraesCS6B01G447600.1	Wheat	nucleus	38.99	22.93
Bra021027.1-P	Field mustard	nucleus	33.94	22.93
Bra017536.1-P	Field mustard	nucleus	28.16	22.1
TraesCS2B01G604700.1	Wheat	nucleus	32.13	22.08
Os04t0683900-01	Rice	nucleus	33.21	21.96
TraesCS2A01G582300.1	Wheat	nucleus	31.77	21.78
Bra035899.1-P	Field mustard	nucleus	30.69	21.68
HORVU7Hr1G122340.3	Barley	nucleus	27.08	21.49
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	31.41	21.48
Bra010070.1-P	Field mustard	nucleus	31.05	21.34
Bra025716.1-P	Field mustard	nucleus	20.58	21.19
Bra040133.1-P	Field mustard	nucleus	29.24	21.15
Bra025717.1-P	Field mustard	nucleus	23.1	21.12
Bra013270.1-P	Field mustard	nucleus	32.13	20.89
Bra029164.1-P	Field mustard	nucleus	31.77	20.75
TraesCS6A01G403700.1	Wheat	nucleus	39.71	20.72
Zm00001d026652_P001	Maize	plastid	29.6	20.65
KXG27470	Sorghum	nucleus	31.05	20.57
Bra022555.1-P	Field mustard	nucleus	31.05	20.53
Bra013886.1-P	Field mustard	nucleus	28.16	20.47
Bra019174.1-P	Field mustard	nucleus	29.24	20.45
Bra028265.1-P	Field mustard	nucleus	31.05	20.05
Bra020612.1-P	Field mustard	nucleus	25.27	19.89
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	28.52	19.7
Bra009999.1-P	Field mustard	nucleus	26.35	19.62
Bra025718.1-P	Field mustard	nucleus, plastid	20.94	19.08
Zm00001d001784_P002	Maize	nucleus	29.24	18.62

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra025511	EnsemblPlants:Bra025511.1	EnsemblPlants:Bra025511.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0043621	InterPro:IPR005175	UniProt:M4E9Q5	PFAM:PF03479
InterPro:PPC_dom	PRINTS:PR00929	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	SMART:SM00384
SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI0002545295	SEG:seg	:	:

Description

AT1G63470 (E=6e-081) | DNA-binding family protein

Coordinates

chrA04:-:8231960..8233620

Molecular Weight (calculated)

29265.4 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.490

Length

277 amino acids

Sequence
(BLAST)

001: MLVKKKRGRP RKYVADNNEG CDLELSPMQS LQKPNISSPV SDPTAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGFAFATH VISVEAGEDI VSKVLSFSQQ
101: RPRALCIMSG TGTASAFTLR QTGSSAPTLS FQGHFDILSV QGCYLVNEEG GSKSRTGGIS VSLSRHDGFL IGGTVGTLIA ASLVQVVACS FVYGSAKAKV
201: IKQESGSKED NTTKKENSME TPASEQRSPR ATESAAEAAQ TPLDYSSPGW AGPGGGGSRT TDSRNNNHLT DIDLTRG

Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)

001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG

Arabidopsis Description

AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.