Factsheet for Bra007595.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003446.1-P
Bra007595.1-P
Bra014444.1-P
Bra018956.1-P
Bra030396.1-P
Bra033121.1-P
Bra039309.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61310.1	Bra018956.1-P	AT1G52240.1	21798944
AT3G61310.1	Bra030396.1-P	AT1G52240.1	21798944
AT3G61310.1	Bra039309.1-P	AT2G45850.1	21798944
AT3G61310.1	Bra003446.1-P	AT3G61310.1	21798944
AT3G61310.1	Bra007595.1-P	AT3G61310.1	21798944
AT3G61310.1	Bra014444.1-P	AT3G61310.1	21798944
AT3G61310.1	Bra033121.1-P	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48928	Canola	nucleus	97.36	96.51
CDX71746	Canola	nucleus	95.6	94.77
Bra014444.1-P	Field mustard	nucleus	80.65	82.58
AT3G61310.1	Thale cress	nucleus, plastid	80.35	77.4
Bra003446.1-P	Field mustard	nucleus	70.38	70.8
Bra039309.1-P	Field mustard	nucleus	67.74	67.74
KRH65066	Soybean	nucleus	53.37	53.53
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	53.37	52.75
KRH48165	Soybean	nucleus	52.49	52.65
KRH40471	Soybean	nucleus	52.49	52.49
KRH00715	Soybean	nucleus	52.2	52.05
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	46.33	47.45
PGSC0003DMT400000467	Potato	nucleus	46.63	46.9
Solyc01g094460.2.1	Tomato	nucleus	46.63	46.9
GSMUA_Achr8P11400_001	Banana	nucleus	45.45	44.8
GSMUA_Achr11P...	Banana	nucleus	46.33	42.59
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	24.05	41.84
GSMUA_Achr11P...	Banana	nucleus	45.75	41.6
Bra025511.1-P	Field mustard	nucleus	32.26	39.71
Bra027642.1-P	Field mustard	nucleus	44.28	39.63
Bra027801.1-P	Field mustard	nucleus	43.4	39.47
GSMUA_Achr4P30000_001	Banana	nucleus	36.66	38.34
Bra022946.1-P	Field mustard	nucleus	29.03	37.79
HORVU2Hr1G123730.3	Barley	plastid	22.87	37.14
TraesCS7A01G565900.1	Wheat	nucleus	32.26	35.83
Zm00001d018515_P002	Maize	nucleus	39.3	34.54
Os02t0824300-01	Rice	nucleus	38.71	33.5
OQU85994	Sorghum	nucleus	39.0	33.17
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	38.12	32.5
Bra019359.1-P	Field mustard	nucleus	31.09	32.22
Bra037321.1-P	Field mustard	nucleus	29.33	31.65
Bra033121.1-P	Field mustard	nucleus	28.74	31.61
Bra013646.1-P	Field mustard	nucleus	28.15	31.48
Bra025717.1-P	Field mustard	nucleus	27.27	30.69
Bra025716.1-P	Field mustard	nucleus	23.46	29.74
Zm00001d026652_P001	Maize	plastid	34.31	29.47
Bra021865.1-P	Field mustard	nucleus	29.91	29.14
TraesCS2A01G582300.1	Wheat	nucleus	34.31	28.96
Bra017536.1-P	Field mustard	nucleus	29.33	28.33
Bra021027.1-P	Field mustard	nucleus	34.02	28.29
KXG27470	Sorghum	nucleus	34.6	28.23
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	33.43	28.15
TraesCS2B01G604700.1	Wheat	nucleus	33.14	28.04
Bra025718.1-P	Field mustard	nucleus, plastid	24.34	27.3
Os04t0683900-01	Rice	nucleus	33.43	27.21
TraesCS6B01G447600.1	Wheat	nucleus	37.24	26.96
Bra020612.1-P	Field mustard	nucleus	26.98	26.14
Bra040133.1-P	Field mustard	nucleus	29.33	26.11
HORVU7Hr1G122340.3	Barley	nucleus	26.69	26.07
Zm00001d001784_P002	Maize	nucleus	33.14	25.98
Bra019174.1-P	Field mustard	nucleus	29.91	25.76
Bra029164.1-P	Field mustard	nucleus	31.67	25.47
TraesCS6A01G403700.1	Wheat	nucleus	39.59	25.42
Bra013270.1-P	Field mustard	nucleus	31.67	25.35
Bra013886.1-P	Field mustard	nucleus	28.15	25.2
Bra035899.1-P	Field mustard	nucleus	28.74	25.0
Bra022555.1-P	Field mustard	nucleus	29.91	24.34
Bra028265.1-P	Field mustard	nucleus	30.5	24.24
Bra010070.1-P	Field mustard	nucleus	27.86	23.57
Bra009999.1-P	Field mustard	nucleus	25.51	23.39
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	26.39	22.44

Protein Annotations

EnsemblPlants:Bra007595.1	EnsemblPlants:Bra007595.1-P	EnsemblPlantsGene:Bra007595	Gene3D:3.30.1330.80	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:AT_hook_DNA-bd_motif	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF44	PFAM:PF03479	PFscan:PS51742	SEG:seg	SMART:SM00384	SUPFAM:SSF117856
UniParc:UPI00025429B3	UniProt:M4CTQ1	MapMan:35.1	:	:	:

Description

AT3G61310 (E=8e-117) | DNA-binding family protein

Coordinates

chrA09:-:29942794..29944321

Molecular Weight (calculated)

35634.7 Da

IEP (calculated)

9.599

GRAVY (calculated)

-0.528

Length

341 amino acids

Sequence
(BLAST)

001: MDRREAMSGS YYIQRGMPGS APPPPQTQQP FHGSQGFHHF SNPNSPFVSN PNLNQVGGGG STAFVSPPLP IESSPADSSA AVAAAAPPPS SGEKRKRGRP
101: RKYGQEGPVS LALSPSMSPN SNKRGRGRPP GSGKKQRLSS SGELMPSSSG MSFTPHVIAV SVGEDIASKV LSFSQQGPRA TCVLSVSGAV STATILQPSP
201: SQGAIKYEGR FELLSLSISY LNATDNDYSN RTGNLSVSLA SPDGRVTGGG IAGPLIAASP VQVIVGSFLW AVPKGKVKKR DEASEDVQDA DGLENNDNNT
301: APTSPPQQSQ NLDQTPVGMW STGSRSMDMH HAHMDIDLMR G

Best Arabidopsis Sequence Match ( AT3G61310.1 )
(BLAST)

001: MDRRDAMALS GSGSYYIQRG IPGSGPPPPQ TQPTFHGSQG FHHFTNSISP FGSNPNPNPN PGGVSTGFVS PPLPVDSSPA DSSAAAAGAL VAPPSGDTSV
101: KRKRGRPRKY GQDGGSVSLA LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK VISFSHQGPR AICVLSASGA
201: VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301: TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG

Arabidopsis Description

AHL11AT-hook motif nuclear-localized protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.