Factsheet for VIT_15s0046g02930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00900.t01
VIT_02s0025g05130.t01
VIT_15s0046g02930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45850.1	VIT_02s0025g05130.t01	AT4G12080.1	21798944
AT2G45850.1	VIT_02s0012g00900.t01	AT4G17950.1	21798944
AT3G61310.1	VIT_15s0046g02930.t01	AT2G45850.1	21798944
AT3G61310.1	VIT_15s0046g02930.t01	AT3G61310.1	21798944
AT3G61310.1	VIT_02s0025g05130.t01	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40471	Soybean	nucleus	71.3	72.14
KRH65066	Soybean	nucleus	71.01	72.06
KRH00715	Soybean	nucleus	71.3	71.93
KRH48165	Soybean	nucleus	70.72	71.76
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	66.67	69.07
Solyc01g094460.2.1	Tomato	nucleus	64.35	65.49
PGSC0003DMT400000467	Potato	nucleus	64.35	65.49
VIT_02s0025g03580.t01	Wine grape	nucleus	60.87	60.69
GSMUA_Achr8P11400_001	Banana	nucleus	60.87	60.69
GSMUA_Achr11P...	Banana	nucleus	64.93	60.38
GSMUA_Achr11P...	Banana	nucleus	64.35	59.2
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	31.3	55.1
CDY37070	Canola	nucleus	53.62	54.25
Bra039309.1-P	Field mustard	nucleus	53.33	53.96
Bra007595.1-P	Field mustard	nucleus	52.75	53.37
CDY48928	Canola	nucleus	53.04	53.2
CDY58791	Canola	nucleus	50.43	53.05
CDY27354	Canola	nucleus	53.62	53.01
CDY51561	Canola	nucleus	52.17	52.94
CDY42495	Canola	nucleus	51.59	52.66
CDX71746	Canola	nucleus	52.46	52.62
AT2G45850.1	Thale cress	nucleus	53.04	52.59
AT3G61310.1	Thale cress	nucleus, plastid	53.91	52.54
Bra014444.1-P	Field mustard	nucleus	50.14	51.95
CDX89109	Canola	nucleus	49.86	51.34
Bra003446.1-P	Field mustard	nucleus	48.7	49.56
GSMUA_Achr4P30000_001	Banana	nucleus	43.77	46.32
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	42.61	44.55
VIT_18s0122g00700.t01	Wine grape	nucleus	44.93	43.91
HORVU2Hr1G123730.3	Barley	plastid	26.67	43.81
TraesCS7A01G565900.1	Wheat	nucleus	38.84	43.65
Os02t0824300-01	Rice	nucleus	48.7	42.64
Zm00001d018515_P002	Maize	nucleus	47.83	42.53
OQU85994	Sorghum	nucleus	48.41	41.65
VIT_15s0048g00870.t01	Wine grape	nucleus	40.0	41.32
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	46.09	39.75
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	40.0	39.32
VIT_02s0012g00900.t01	Wine grape	nucleus	40.0	39.09
VIT_08s0007g04020.t01	Wine grape	nucleus	39.42	37.67
TraesCS2A01G582300.1	Wheat	nucleus	41.16	35.15
VIT_14s0081g00620.t01	Wine grape	nucleus	36.23	35.01
TraesCS2B01G604700.1	Wheat	nucleus	40.87	34.99
TraesCS6B01G447600.1	Wheat	nucleus	47.54	34.82
Zm00001d026652_P001	Maize	plastid	40.0	34.76
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	40.29	34.32
KXG27470	Sorghum	nucleus	40.58	33.49
Os04t0683900-01	Rice	nucleus	39.71	32.7
TraesCS6A01G403700.1	Wheat	nucleus	48.41	31.45
HORVU7Hr1G122340.3	Barley	nucleus	31.59	31.23
Zm00001d001784_P002	Maize	nucleus	38.55	30.57

Protein Annotations

EntrezGene:100265498	wikigene:100265498	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	ProteinID:CBI40344
ProteinID:CBI40344.3	UniProt:D7UC79	EMBL:FN596755	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	EntrezGene:LOC100265498	wikigene:LOC100265498	PFAM:PF03479	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI00015CA805
ArrayExpress:VIT_15s0046g02930	EnsemblPlantsGene:VIT_15s0046g02930	EnsemblPlants:VIT_15s0046g02930.t01	RefSeq:XP_002272142	RefSeq:XP_002272142.1	RefSeq:XP_010661768.1
RefSeq:XP_010661769.1	RefSeq:XP_010661770.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:+:19636988..19643596

Molecular Weight (calculated)

35237.9 Da

IEP (calculated)

10.661

GRAVY (calculated)

-0.303

Length

345 amino acids

Sequence
(BLAST)

001: MDRRDAMAMP GSGSYYMQRG MAGSGSGSGP QPGLHGSPGI RSLSNPSMPF QPNIGGGGSM GSTLPVEPSS VISTHGVNVG APSTLLPPSE PVKRKRGRPR
101: KYGPDGTVSL ALSPSSATSP GTLTASTQKR GRGRPPGTGR KQQLASLGEW LSGSAGMGFT PHVITVAVGE DVATKIMSFS QQGPRAICIL SANGAVSTVT
201: LRQPSTSGGT VTYEGRFEIL CLSGSYLLTD NGGSRNRTGG LSVSLASPDG RVIGGGVGGM LTAASPVQVI VGSFIWGNSK TKNKMGESVE GAGDSERQTV
301: DHPITTPTTV PASQNLTPAS SMGVWPGSRQ LDMRNSPVDI DLMRG

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.