Factsheet for VIT_08s0007g04020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20019	Soybean	nucleus	58.17	55.41
PGSC0003DMT400007056	Potato	nucleus	60.11	53.45
Solyc09g008940.2.1	Tomato	nucleus	59.28	51.32
KRH32644	Soybean	plastid	55.68	50.76
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	44.6	47.92
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	46.26	45.5
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	44.88	44.26
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	39.89	43.64
Zm00001d004924_P001	Maize	cytosol	39.89	40.22
Zm00001d052495_P001	Maize	cytosol, nucleus, peroxisome	39.06	39.94
VIT_18s0122g00700.t01	Wine grape	nucleus	39.06	39.94
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	40.17	39.62
EES15662	Sorghum	cytosol, nucleus, peroxisome	39.06	39.61
VIT_15s0048g00870.t01	Wine grape	nucleus	36.57	39.52
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	37.67	39.42
EES07975	Sorghum	cytosol	39.34	39.23
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	37.95	39.03
VIT_02s0012g00900.t01	Wine grape	nucleus	37.67	38.53
TraesCS5D01G138000.1	Wheat	plastid	37.95	37.33
TraesCS5B01G130400.1	Wheat	plastid	37.67	36.96
TraesCS5B01G129200.1	Wheat	plastid	37.4	36.78
TraesCS5A01G130500.1	Wheat	plastid	37.4	36.59
Os12t0147000-00	Rice	nucleus	38.5	36.48
HORVU5Hr1G041290.4	Barley	cytosol, nucleus, peroxisome	37.67	36.46
VIT_02s0025g03580.t01	Wine grape	nucleus	33.8	35.26
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	45.71	34.09
VIT_14s0081g00620.t01	Wine grape	nucleus	28.25	28.57

Protein Annotations

EntrezGene:100254577	wikigene:100254577	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	ProteinID:CCB55390
ProteinID:CCB55390.1	UniProt:F6HKG8	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	EntrezGene:LOC100254577	wikigene:LOC100254577	PFAM:PF03479	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF14	SMART:SM00384	SUPFAM:SSF117856	TIGR:TC62298
TIGR:TC70117	TMHMM:TMhelix	UniParc:UPI0001983E31	ArrayExpress:VIT_08s0007g04020	EnsemblPlantsGene:VIT_08s0007g04020	EnsemblPlants:VIT_08s0007g04020.t01
RefSeq:XP_002277536	RefSeq:XP_002277536.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:18015431..18020165

Molecular Weight (calculated)

36742.9 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.384

Length

361 amino acids

Sequence
(BLAST)

001: MEEKESTVSG SPGNSEAESP PVSGVVPQVM NMAINMSMER SLGGGDDGGG VGGNVGGRIS GGGGGGSGSF DLLGRKKRGR PRKYDADGNL RLSYAVSPPP
101: GFTLSSPSSD FSSKRGRGRP PGSGNWQLLA SLGELFANTA GGDFTPHVVT VNTGEDVASK ILSFSQKGPR GICVLSANGA VSNVTIRQPG SSGGILTYEG
201: RFEILSLSGS FTVSDSGGAR SRTGGLSVSL AGPDGRVIGG GIAGILTAAG PIQIVVGSFM PNGYKTHKRK HHREPTTTSI IPPAPDTVTA ARPISQAAPE
301: VGPCLNSTSP SHGQSHGEAD DSVNNKQISN VISLQSAAWN GSEHKSEQRP SPDINLTVPS E

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.