Factsheet for GSMUA_Achr10P15440_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	80.06	73.5
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	62.5	57.22
GSMUA_Achr7P20540_001	Banana	nucleus	39.58	45.39
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	25.6	45.26
VIT_08s0007g04020.t01	Wine grape	nucleus	47.92	44.6
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	42.26	42.64
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	42.56	42.56
GSMUA_Achr6P03420_001	Banana	nucleus	44.94	41.94
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	60.12	41.74
GSMUA_Achr3P03710_001	Banana	nucleus	44.94	41.37
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	24.11	41.33
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	44.64	40.98
Zm00001d052495_P001	Maize	cytosol, nucleus, peroxisome	42.86	40.79
KRH20019	Soybean	nucleus	45.83	40.63
Zm00001d004924_P001	Maize	cytosol	42.86	40.22
GSMUA_Achr1P19840_001	Banana	nucleus	44.64	39.37
EES15662	Sorghum	cytosol, nucleus, peroxisome	41.67	39.33
EES07975	Sorghum	cytosol	41.96	38.95
GSMUA_Achr8P11400_001	Banana	nucleus	39.88	38.73
TraesCS5D01G138000.1	Wheat	plastid	42.26	38.69
TraesCS5B01G130400.1	Wheat	plastid	42.26	38.59
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	46.73	38.57
Os12t0147000-00	Rice	nucleus	43.45	38.32
TraesCS5A01G130500.1	Wheat	plastid	41.96	38.21
TraesCS5B01G129200.1	Wheat	plastid	41.67	38.15
GSMUA_Achr11P...	Banana	nucleus	41.96	38.01
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	43.15	37.96
GSMUA_Achr4P30000_001	Banana	nucleus	36.61	37.73
GSMUA_Achr11P...	Banana	nucleus	41.96	37.6
KRH32644	Soybean	plastid	44.05	37.37
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	38.99	37.22
HORVU5Hr1G041290.4	Barley	cytosol, nucleus, peroxisome	41.07	37.0
GSMUA_Achr2P09840_001	Banana	nucleus	37.8	35.57
PGSC0003DMT400007056	Potato	nucleus	41.96	34.73
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	40.18	34.62
Solyc09g008940.2.1	Tomato	nucleus	42.26	34.05
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	42.26	33.73
KRH25156	Soybean	cytosol	22.32	28.85
KRH30520	Soybean	nucleus	28.27	25.68

Protein Annotations

EnsemblPlants:GSMUA_Achr10P15440_001	EnsemblPlants:GSMUA_Achr10T15440_001	EnsemblPlantsGene:GSMUA_Achr10G15440_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000296443B
UniProt:M0RIH0	MapMan:35.1	:	:	:	:

Description

DNA binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr10G15440_001]

Coordinates

chr10:+:23374485..23378433

Molecular Weight (calculated)

33599.7 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.196

Length

336 amino acids

Sequence
(BLAST)

001: MESVVVTGCE GGRGGGDGAG GGGGGGGVEA GHSSPTLSPT PPQLVAFSSG VVGVTGMPGD LPAPKKRGRP RKYGSDGMAL ALSPTSGSAS PFSPASSDAK
101: RGRGRPPGSG KRQLLAALGE WFACSAGGSF TPHVVTIATG EDVAARILSF SQKGPRAICI LSANGAISNV TLRQPGSSGG TLTYEGRFEI LSLSGSFTIS
201: ETGGMRSRTG GISVSLAGPD GRVIGGGVAG LLLAASPIQV VVGSFMPNVY KEKQAKPTHQ AQPSALPGTT GLLTAAMPIS QANPEEDCET PTSSSLARQT
301: HAENSLCGPN PNSTWHGLQS SEHKPSPDIN ICLQGE

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.