Factsheet for GSMUA_Achr1P03070_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03070_001
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr4P30000_001
GSMUA_Achr5P03370_001
GSMUA_Achr5P20630_001
GSMUA_Achr8P11400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944
AT2G45850.1	GSMUA_Achr2P09840_001	AT4G17950.1	21798944
AT2G45850.1	GSMUA_Achr4P27240_001	AT4G17950.1	21798944
AT2G45850.1	GSMUA_Achr5P03370_001	AT4G17950.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr1P03070_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr4P30000_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr5P20630_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr8P11400_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05193	Soybean	plastid	31.12	41.5
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	34.18	35.26
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	56.12	33.03
GSMUA_Achr8P11400_001	Banana	nucleus	55.61	31.5
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	55.1	31.3
HORVU2Hr1G123730.3	Barley	plastid	33.16	30.95
GSMUA_Achr11P...	Banana	nucleus	57.14	29.87
KRH00715	Soybean	nucleus	51.02	29.24
KRH48165	Soybean	nucleus	50.51	29.12
KRH65066	Soybean	nucleus	50.51	29.12
KRH40471	Soybean	nucleus	50.51	29.03
GSMUA_Achr11P...	Banana	nucleus	54.08	28.57
GSMUA_Achr7P20540_001	Banana	nucleus	40.82	27.3
PGSC0003DMT400000467	Potato	nucleus	45.92	26.55
GSMUA_Achr4P30000_001	Banana	nucleus	43.88	26.38
Solyc01g094460.2.1	Tomato	nucleus	45.41	26.25
VIT_02s0025g03580.t01	Wine grape	nucleus	45.41	25.72
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	42.86	25.0
Bra014444.1-P	Field mustard	nucleus	42.35	24.92
CDX89109	Canola	nucleus	42.35	24.78
GSMUA_Achr3P03710_001	Banana	nucleus	45.92	24.66
CDY42495	Canola	nucleus	42.35	24.56
Solyc08g080960.2.1	Tomato	nucleus	41.84	24.55
Bra025511.1-P	Field mustard	nucleus	34.69	24.55
PGSC0003DMT400014926	Potato	plastid	42.86	24.35
Solyc08g008030.2.1	Tomato	nucleus	42.86	24.28
GSMUA_Achr6P03420_001	Banana	nucleus	44.39	24.17
CDY48928	Canola	nucleus	42.35	24.13
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	41.33	24.11
Bra007595.1-P	Field mustard	nucleus	41.84	24.05
AT3G61310.1	Thale cress	nucleus, plastid	43.37	24.01
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	42.86	23.86
CDX71746	Canola	nucleus	41.84	23.84
CDY37070	Canola	nucleus	41.33	23.75
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	44.39	23.71
Bra039309.1-P	Field mustard	nucleus	40.82	23.46
AT2G45850.1	Thale cress	nucleus	41.33	23.28
CDY25500	Canola	nucleus	43.88	23.24
CDY27354	Canola	nucleus	41.33	23.21
GSMUA_Achr1P19840_001	Banana	nucleus	44.9	23.1
KRH27929	Soybean	nucleus	41.33	23.01
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	42.86	22.95
KRH59866	Soybean	nucleus	40.82	22.73
CDY64088	Canola	nucleus, plasma membrane, plastid	41.84	22.65
Bra027642.1-P	Field mustard	nucleus	43.88	22.57
CDY34355	Canola	nucleus	43.37	22.49
PGSC0003DMT400031843	Potato	plastid	43.88	22.4
AT1G63480.1	Thale cress	nucleus	40.82	22.16
KRH41165	Soybean	nucleus	39.8	22.16
KRH77536	Soybean	nucleus	40.31	22.13
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	45.92	22.11
CDY45364	Canola	nucleus	40.31	21.53
CDY51561	Canola	nucleus	37.24	21.47
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	41.84	21.47
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	42.35	21.28
AT1G63470.1	Thale cress	nucleus	40.82	21.16
Bra027801.1-P	Field mustard	nucleus	40.31	21.07
CDY58791	Canola	nucleus	35.2	21.04
GSMUA_Achr2P09840_001	Banana	nucleus	37.76	20.73
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	44.39	20.67
CDY39751	Canola	nucleus	36.22	18.59
Bra003446.1-P	Field mustard	nucleus	32.14	18.58
CDY46385	Canola	nucleus	35.71	18.32
TraesCS2A01G582300.1	Wheat	nucleus	36.22	17.57
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	43.37	17.56
TraesCS2B01G604700.1	Wheat	nucleus	35.71	17.37
Os04t0683900-01	Rice	nucleus	36.73	17.18
Zm00001d026652_P001	Maize	plastid	34.69	17.13
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	35.2	17.04
KXG27470	Sorghum	nucleus	35.71	16.75
Zm00001d001784_P002	Maize	nucleus	35.2	15.86

Protein Annotations

EnsemblPlants:GSMUA_Achr1P03070_001	EnsemblPlants:GSMUA_Achr1T03070_001	EnsemblPlantsGene:GSMUA_Achr1G03070_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PFAM:PF03479	PFscan:PS51742	SUPFAM:SSF117856	UniParc:UPI000294CC5C	UniProt:M0RWL5
MapMan:35.1	:	:	:	:	:

Description

DNA binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr1G03070_001]

Coordinates

chr1:-:2474613..2477536

Molecular Weight (calculated)

20809.3 Da

IEP (calculated)

8.675

GRAVY (calculated)

0.097

Length

196 amino acids

Sequence
(BLAST)

001: MQSIILNLKT FAYHPATGEW IVTSAGVGFT PHVMMIAVGE NISEKIMSFS KQGPRAVFIL SAYGAVSTVT LHKPGTSGIM VTYEGLFEIL CLSGLYLPTN
101: NDGLHSQSRG LCISLSSPYG RVIGGLVGGS LIAAKPVQVI VGSFIYAGSS AKDRIITEDG RDDVSEHQIR DKQGKPFSVP QNQDITPKMK GGLPGP

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.