Factsheet for VIT_02s0025g03580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0046g02930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	VIT_15s0046g02930.t01	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05193	Soybean	plastid	27.46	64.63
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	60.69	60.87
KRH59866	Soybean	nucleus	60.4	59.38
KRH27929	Soybean	nucleus	59.83	58.81
Solyc08g080960.2.1	Tomato	nucleus	56.65	58.68
PGSC0003DMT400014926	Potato	plastid	58.38	58.55
KRH77536	Soybean	nucleus	60.4	58.54
KRH41165	Soybean	nucleus	59.54	58.52
Solyc08g008030.2.1	Tomato	nucleus	57.51	57.51
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	55.2	57.36
GSMUA_Achr8P11400_001	Banana	nucleus	52.89	52.89
CDY64088	Canola	nucleus, plasma membrane, plastid	54.34	51.93
GSMUA_Achr11P...	Banana	nucleus	55.49	51.2
PGSC0003DMT400031843	Potato	plastid	56.65	51.04
GSMUA_Achr11P...	Banana	nucleus	54.62	50.94
CDY25500	Canola	nucleus	54.34	50.81
AT1G63470.1	Thale cress	nucleus	55.49	50.79
CDY45364	Canola	nucleus	53.76	50.68
AT1G63480.1	Thale cress	nucleus	52.31	50.14
Bra027801.1-P	Field mustard	nucleus	54.05	49.87
Bra027642.1-P	Field mustard	nucleus	54.62	49.61
Bra025511.1-P	Field mustard	nucleus	39.6	49.46
CDY34355	Canola	nucleus	52.6	48.15
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	25.72	45.41
CDY39751	Canola	nucleus	49.71	45.03
CDY46385	Canola	nucleus	49.13	44.5
GSMUA_Achr4P30000_001	Banana	nucleus	41.04	43.56
HORVU2Hr1G123730.3	Barley	plastid	25.14	41.43
Os02t0824300-01	Rice	nucleus	46.82	41.12
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	38.73	40.61
Zm00001d018515_P002	Maize	nucleus	45.38	40.46
OQU85994	Sorghum	nucleus	45.95	39.65
VIT_15s0048g00870.t01	Wine grape	nucleus	37.28	38.62
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	44.51	38.5
TraesCS7A01G565900.1	Wheat	nucleus	34.1	38.44
VIT_18s0122g00700.t01	Wine grape	nucleus	37.57	36.83
VIT_02s0012g00900.t01	Wine grape	nucleus	36.99	36.26
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	35.26	34.76
VIT_08s0007g04020.t01	Wine grape	nucleus	35.26	33.8
TraesCS2A01G582300.1	Wheat	nucleus	37.86	32.43
TraesCS2B01G604700.1	Wheat	nucleus	37.57	32.26
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	37.28	31.85
Os04t0683900-01	Rice	nucleus	38.44	31.74
VIT_14s0081g00620.t01	Wine grape	nucleus	32.37	31.37
TraesCS6B01G447600.1	Wheat	nucleus	42.49	31.21
Zm00001d026652_P001	Maize	plastid	35.26	30.73
KXG27470	Sorghum	nucleus	36.42	30.14
TraesCS6A01G403700.1	Wheat	nucleus	44.8	29.19
Zm00001d001784_P002	Maize	nucleus	34.68	27.59
HORVU7Hr1G122340.3	Barley	nucleus	27.75	27.51

Protein Annotations

EntrezGene:100249560	wikigene:100249560	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	ProteinID:CCB58353
ProteinID:CCB58353.1	UniProt:F6HUD0	EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	EntrezGene:LOC100249560	wikigene:LOC100249560	PFAM:PF03479	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	SMART:SM00384	SUPFAM:SSF117856	TIGR:TC59390
UniParc:UPI0001982C67	ArrayExpress:VIT_02s0025g03580	EnsemblPlantsGene:VIT_02s0025g03580	EnsemblPlants:VIT_02s0025g03580.t01	unigene:Vvi.12976	RefSeq:XP_002273061
RefSeq:XP_002273061.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:3130678..3137363

Molecular Weight (calculated)

35797.5 Da

IEP (calculated)

10.565

GRAVY (calculated)

-0.310

Length

346 amino acids

Sequence
(BLAST)

001: MDGREAMALS GSPPYYIHRG VVGSASLSGS GIHSGGLHAP PGFRPLSNPG IPVQSNVRNN SVGQTFSVDH SQTNFPHGFN MAVPSGVPPA EPVKRKRGRP
101: RKYGPDGNVS LGLSPMSARP SLGSGSVTPT QKRGRGRPPG TGRKQQLATL GEWMNSSAGL AFAPHVISMA VGEDIATRIL SFSQQRPRAL CILSASGTVS
201: AVTLRQPTSS SGTVTYEGRF EILCLSGSYL PAETGGPRNR IGGISVSLCS PDGHVIGGGV GGMLIAASPV QVVACSFVYG GSKTKNKNGD EPKGDQNSGL
301: QPSESAAPSS VPLGQHFAPI SAMGMWPSSR QVDLRNPHTD IDLTRG

Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)

001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG

Arabidopsis Description

AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.