Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g094460.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63480.1 | Solyc01g094460.2.1 | AT3G61310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400031843 | Potato | plastid | 94.91 | 82.55 |
| Solyc08g008030.2.1 | Tomato | nucleus | 75.15 | 72.54 |
| KRH05193 | Soybean | plastid | 25.75 | 58.5 |
| VIT_02s0025g03580.t01 | Wine grape | nucleus | 58.68 | 56.65 |
| KRH27929 | Soybean | nucleus | 53.29 | 50.57 |
| KRH59866 | Soybean | nucleus | 52.99 | 50.28 |
| KRH77536 | Soybean | nucleus | 53.29 | 49.86 |
| KRH41165 | Soybean | nucleus | 51.8 | 49.15 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 47.9 | 48.05 |
| Solyc01g094460.2.1 | Tomato | nucleus | 47.6 | 46.9 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 47.9 | 46.24 |
| Bra025511.1-P | Field mustard | nucleus | 37.43 | 45.13 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 47.01 | 43.37 |
| CDY25500 | Canola | nucleus | 47.6 | 42.97 |
| GSMUA_Achr11P... | Banana | nucleus | 47.6 | 42.86 |
| CDY45364 | Canola | nucleus | 47.01 | 42.78 |
| GSMUA_Achr11P... | Banana | nucleus | 47.9 | 42.67 |
| AT1G63470.1 | Thale cress | nucleus | 47.9 | 42.33 |
| Bra027801.1-P | Field mustard | nucleus | 47.01 | 41.87 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 24.55 | 41.84 |
| Bra027642.1-P | Field mustard | nucleus | 47.31 | 41.47 |
| CDY34355 | Canola | nucleus | 46.41 | 41.01 |
| AT1G63480.1 | Thale cress | nucleus | 43.41 | 40.17 |
| HORVU2Hr1G123730.3 | Barley | plastid | 25.15 | 40.0 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 38.62 | 39.57 |
| CDY39751 | Canola | nucleus | 44.31 | 38.74 |
| CDY46385 | Canola | nucleus | 43.71 | 38.22 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 34.73 | 37.78 |
| Zm00001d018515_P002 | Maize | nucleus | 43.11 | 37.11 |
| Os02t0824300-01 | Rice | nucleus | 43.41 | 36.8 |
| OQU85994 | Sorghum | nucleus | 43.41 | 36.16 |
| Solyc01g091370.2.1 | Tomato | nucleus | 34.13 | 35.85 |
| Solyc08g079630.2.1 | Tomato | nucleus | 34.43 | 35.83 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 42.81 | 35.75 |
| Solyc08g007530.2.1 | Tomato | nucleus | 35.03 | 35.67 |
| Solyc03g007150.2.1 | Tomato | nucleus | 32.93 | 33.85 |
| Solyc04g053090.1.1 | Tomato | plastid | 17.07 | 33.73 |
| Solyc04g053100.1.1 | Tomato | plastid | 16.47 | 33.13 |
| Solyc12g094710.1.1 | Tomato | nucleus | 34.73 | 32.49 |
| Solyc02g038760.2.1 | Tomato | nucleus | 30.84 | 31.6 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 37.72 | 31.19 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 36.83 | 30.52 |
| Solyc11g006190.1.1 | Tomato | nucleus | 30.54 | 30.27 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 36.23 | 29.88 |
| Zm00001d026652_P001 | Maize | plastid | 34.73 | 29.22 |
| Os04t0683900-01 | Rice | nucleus | 36.53 | 29.12 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 41.02 | 29.09 |
| KXG27470 | Sorghum | nucleus | 35.93 | 28.71 |
| Solyc06g035430.2.1 | Tomato | nucleus | 29.04 | 28.03 |
| Solyc02g082300.2.1 | Tomato | nucleus, plastid | 21.86 | 27.97 |
| Solyc08g077030.2.1 | Tomato | nucleus | 33.53 | 27.38 |
| Zm00001d001784_P002 | Maize | nucleus | 35.03 | 26.9 |
| Solyc09g008940.2.1 | Tomato | nucleus | 33.23 | 26.62 |
| TraesCS6A01G403700.1 | Wheat | nucleus | 42.22 | 26.55 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 27.25 | 26.07 |
| Solyc08g006950.2.1 | Tomato | nucleus | 29.64 | 25.32 |
| Solyc12g019430.1.1 | Tomato | cytosol, plastid, vacuole | 14.07 | 24.48 |
Protein Annotations
| EnsemblPlants:Solyc08g080960.2.1 | EnsemblPlantsGene:Solyc08g080960.2 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF9 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI000276BCDD |
| UniProt:K4CP94 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:64088917..64093864
Molecular Weight (calculated)
34169.0 Da
IEP (calculated)
10.103
GRAVY (calculated)
-0.337
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIREGMALS GSAAYYLNRG ISGSGSNVGS GSGTPSGVST PSGYKSLTNA NIAVQSNMGS SSGNVNSGYQ VENSSSNFGH GVNISMASSV SPGSDPVKKK
101: RGRPRKYGPD GTNMSLALSP LSSNPPSGSI TPGPKRIRGR PPGSGWKQQL ASVGEWMSSS AGLAFTPHVI HIGVGEDVAE KLLAFAQQRP RALCILSANG
201: AVSAITLRPP ANSGATVAYE GRFEILSLSG SYLVAETGGP RTRTGGISIS VCSPDGHVIG GAIGGRLIAA SPVQVVVCSF VYDPKGKSKP ESSTRDEQES
301: AEKSSTPGSG RSVWPPSSRA DVRNSQTEID LTRG
101: RGRPRKYGPD GTNMSLALSP LSSNPPSGSI TPGPKRIRGR PPGSGWKQQL ASVGEWMSSS AGLAFTPHVI HIGVGEDVAE KLLAFAQQRP RALCILSANG
201: AVSAITLRPP ANSGATVAYE GRFEILSLSG SYLVAETGGP RTRTGGISIS VCSPDGHVIG GAIGGRLIAA SPVQVVVCSF VYDPKGKSKP ESSTRDEQES
301: AEKSSTPGSG RSVWPPSSRA DVRNSQTEID LTRG
001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
Arabidopsis Description
AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.