Factsheet for Solyc08g077030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045147	Potato	plastid	78.24	96.97
VIT_02s0012g00900.t01	Wine grape	nucleus	51.83	60.06
Os10t0572900-02	Rice	nucleus	33.25	54.18
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	24.45	52.63
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	35.21	46.91
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	40.1	46.59
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	21.03	45.5
OQU82226	Sorghum	plastid	37.16	43.8
Solyc04g053090.1.1	Tomato	plastid	17.85	43.2
Os04t0589900-01	Rice	nucleus	39.61	42.74
GSMUA_Achr2P09840_001	Banana	nucleus	36.67	42.02
Solyc12g094710.1.1	Tomato	nucleus	34.72	39.78
Zm00001d026036_P001	Maize	nucleus	38.88	39.55
Solyc02g038760.2.1	Tomato	nucleus	31.3	39.26
Solyc04g053100.1.1	Tomato	plastid	15.65	38.55
Zm00001d030053_P003	Maize	plastid	39.12	38.37
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	38.39	38.11
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	38.39	38.11
TraesCS2A01G449500.1	Wheat	plastid	38.14	38.05
KXG38867	Sorghum	plastid	39.12	37.83
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	39.36	37.53
Solyc01g094460.2.1	Tomato	nucleus	31.05	37.46
Solyc08g006950.2.1	Tomato	nucleus	34.96	36.57
TraesCS1B01G206100.2	Wheat	nucleus	39.85	36.14
TraesCS1D01G194900.2	Wheat	nucleus	40.1	36.12
TraesCS1A01G190900.1	Wheat	nucleus	39.85	35.9
Solyc08g079630.2.1	Tomato	nucleus	28.12	35.83
Solyc08g007530.2.1	Tomato	nucleus	28.61	35.67
Solyc03g007150.2.1	Tomato	nucleus	28.12	35.38
HORVU1Hr1G049980.12	Barley	nucleus	40.1	35.34
Solyc02g082300.2.1	Tomato	nucleus, plastid	22.49	35.25
Solyc08g080960.2.1	Tomato	nucleus	27.38	33.53
Solyc01g091370.2.1	Tomato	nucleus	25.43	32.7
Solyc06g035430.2.1	Tomato	nucleus	26.89	31.79
Solyc11g006190.1.1	Tomato	nucleus	25.92	31.45
Solyc08g008030.2.1	Tomato	nucleus	25.67	30.35
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	13.2	28.12
Solyc09g008940.2.1	Tomato	nucleus	28.36	27.82

Protein Annotations

EnsemblPlants:Solyc08g077030.2.1	EnsemblPlantsGene:Solyc08g077030.2	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF17	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000276C0C4
UniProt:K4CN63	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr8:-:60970733..60977474

Molecular Weight (calculated)

42853.7 Da

IEP (calculated)

8.006

GRAVY (calculated)

-0.729

Length

409 amino acids

Sequence
(BLAST)

001: MDSQESQAGH HQNQHHHQPQ HPQFHHQQQH GHGHGHGHHP MMMARPQHHQ LQQLQQQHHQ HQQQANTFGL PNNVPTHNNN NSAMMQQLQQ HQQQNSGFPF
101: NSVVNTASAA VAAPQHNLDY SDASSPRATG FSIEPARKKR GRPRKYSPDG NIALGLSPTP VTPISSGVPP TDSGSGGGGD AEGPSSENPS KKARGRPPGS
201: GKKQLDALGA AGVGFTPHVI TVNVGEDIAS KIMAFSQQGP RTVCILSANG AICNVTLRQP AMGGGTINYE GRYEIISLTG SFMQSENNGS SGPSGLSVSL
301: AGADGRVMGG GVSGVLMAAT PVQVIVGSFL AEGKKPKSKV PSSTPPSNML NFGAPATGES PPSQGDASSD SSEENGDSPF QHESGPYGNA GQPMHGMSMY
401: ANMGWPKSL

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.