Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0572900-02 | Rice | nucleus | 53.38 | 91.24 |
| KXG38867 | Sorghum | plastid | 87.41 | 88.65 |
| Zm00001d030053_P003 | Maize | plastid | 85.55 | 88.01 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 77.86 | 73.57 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 76.92 | 73.17 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 77.16 | 72.91 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 78.32 | 72.41 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 31.0 | 70.0 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 48.72 | 59.38 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 48.48 | 58.26 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 42.19 | 51.27 |
| Zm00001d026036_P001 | Maize | nucleus | 46.15 | 49.25 |
| Solyc04g053090.1.1 | Tomato | plastid | 18.18 | 46.15 |
| PGSC0003DMT400045147 | Potato | plastid | 35.43 | 46.06 |
| Zm00001d020951_P002 | Maize | cytosol, nucleus, peroxisome, plastid | 34.73 | 44.48 |
| KRH58200 | Soybean | nucleus | 37.3 | 44.2 |
| Zm00001d052901_P002 | Maize | nucleus | 37.53 | 43.63 |
| Solyc04g053100.1.1 | Tomato | plastid | 16.55 | 42.77 |
| KRH04337 | Soybean | nucleus | 34.27 | 41.29 |
| CDY01503 | Canola | cytosol | 24.48 | 40.54 |
| Zm00001d031481_P001 | Maize | nucleus, peroxisome, plasma membrane, plastid | 38.69 | 40.29 |
| Zm00001d006034_P003 | Maize | nucleus | 40.09 | 40.0 |
| Zm00001d037425_P001 | Maize | nucleus | 32.87 | 39.5 |
| Solyc08g077030.2.1 | Tomato | nucleus | 37.53 | 39.36 |
| PGSC0003DMT400052826 | Potato | nucleus | 32.87 | 39.17 |
| KRH28286 | Soybean | plastid | 30.54 | 38.64 |
| KRH77206 | Soybean | nucleus | 30.07 | 38.17 |
| Zm00001d015090_P001 | Maize | extracellular | 21.91 | 35.47 |
| Zm00001d052495_P001 | Maize | cytosol, nucleus, peroxisome | 28.9 | 35.13 |
| Zm00001d018515_P002 | Maize | nucleus | 31.7 | 35.05 |
| AT5G46640.1 | Thale cress | nucleus | 31.47 | 34.97 |
| Zm00001d004924_P001 | Maize | cytosol | 28.9 | 34.64 |
| Solyc08g006950.2.1 | Tomato | nucleus | 31.24 | 34.27 |
| CDX78814 | Canola | nucleus | 32.4 | 34.15 |
| CDY03203 | Canola | nucleus | 28.44 | 34.08 |
| CDY68252 | Canola | nucleus | 23.31 | 33.67 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 31.24 | 33.5 |
| CDY41027 | Canola | cytosol | 20.75 | 33.46 |
| CDY44500 | Canola | nucleus | 32.63 | 33.33 |
| Bra017536.1-P | Field mustard | nucleus | 27.27 | 33.14 |
| CDY35172 | Canola | nucleus | 27.27 | 33.14 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 30.07 | 32.99 |
| Bra021027.1-P | Field mustard | nucleus | 31.47 | 32.93 |
| CDY41028 | Canola | nucleus, plastid | 18.88 | 32.66 |
| CDY01506 | Canola | nucleus | 22.61 | 32.23 |
| Bra025717.1-P | Field mustard | nucleus | 22.61 | 32.01 |
| CDY26692 | Canola | nucleus | 22.61 | 32.01 |
| CDY08882 | Canola | nucleus | 32.17 | 31.72 |
| Bra025716.1-P | Field mustard | nucleus | 19.81 | 31.6 |
| CDY26693 | Canola | plastid | 19.81 | 31.48 |
| CDY26694 | Canola | cytosol, plastid | 19.11 | 31.3 |
| Bra025718.1-P | Field mustard | nucleus, plastid | 22.14 | 31.25 |
| CDX76549 | Canola | nucleus | 31.93 | 31.14 |
| AT4G17950.1 | Thale cress | nucleus | 31.7 | 30.98 |
| CDY26691 | Canola | cytosol, plastid | 22.38 | 30.87 |
| Bra013270.1-P | Field mustard | nucleus | 30.07 | 30.28 |
| Zm00001d026652_P001 | Maize | plastid | 26.57 | 28.72 |
| Zm00001d001784_P002 | Maize | nucleus | 26.57 | 26.21 |
| Zm00001d020950_P001 | Maize | cytosol | 1.17 | 4.27 |
Protein Annotations
| EnsemblPlants:Zm00001d047042_P004 | EnsemblPlants:Zm00001d047042_T004 | EnsemblPlantsGene:Zm00001d047042 | EntrezGene:100192715 | Gene3D:3.30.1330.80 | InterPro:IPR005175 |
| InterPro:PPC_dom | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF25 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:AQL05460.1 |
| SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0002210AD4 | UniProt:K7VXT0 | MapMan:35.1 | : |
Description
AT-hook motif nuclear-localized protein 13
Coordinates
chr9:+:116427891..116431306
Molecular Weight (calculated)
44198.3 Da
IEP (calculated)
10.146
GRAVY (calculated)
-0.491
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: METKDVSPLA AAAAAPVLAP ASQQQQQQPP QPQQHHHQPP QPQHQHQHQP PPPPFPQQAA PAAASSPAAS MPGGMRLSFD HMPGKAPGEQ HHHHHHAAPP
101: MLYAAPPQGA GAPGGSVLGM GELMRKKRGR PRKYAPDGSM ALALAPISSA SAGGGGGAAA PGQQQQHGGF SIGSPPSDPS AKRRGRPPGS GKKKQFEALG
201: SWGIAFTPHI LAVKAGEDVA SKIMTFSQQG PRTVCILSAN GAISNVTLRQ PATSGGLVTY EGRFEIISLS GSFLLAEDGD TRSRTGGLSV ALAGSDGRVL
301: GGCVAGMLMA ATPVQVVVAS FIAEGKKSKP AEARKVEPMA APPPPPPQMA AFVPAPVATS PPSEGTSSAS SDDSGSPINH GAMPFSHSSQ HQHPHQHQQH
401: MPPAYASGGW SLSVHQQNRH DSDMKMMSN
101: MLYAAPPQGA GAPGGSVLGM GELMRKKRGR PRKYAPDGSM ALALAPISSA SAGGGGGAAA PGQQQQHGGF SIGSPPSDPS AKRRGRPPGS GKKKQFEALG
201: SWGIAFTPHI LAVKAGEDVA SKIMTFSQQG PRTVCILSAN GAISNVTLRQ PATSGGLVTY EGRFEIISLS GSFLLAEDGD TRSRTGGLSV ALAGSDGRVL
301: GGCVAGMLMA ATPVQVVVAS FIAEGKKSKP AEARKVEPMA APPPPPPQMA AFVPAPVATS PPSEGTSSAS SDDSGSPINH GAMPFSHSSQ HQHPHQHQQH
401: MPPAYASGGW SLSVHQQNRH DSDMKMMSN
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
Arabidopsis Description
AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.