Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g077030.2.1 | Tomato | nucleus | 96.97 | 78.24 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 60.0 | 56.09 |
| Os10t0572900-02 | Rice | nucleus | 41.21 | 54.18 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 30.61 | 53.16 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 43.64 | 46.91 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 26.36 | 46.03 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 48.18 | 45.17 |
| PGSC0003DMT400045285 | Potato | cytosol | 19.7 | 43.92 |
| OQU82226 | Sorghum | plastid | 46.06 | 43.8 |
| PGSC0003DMT400052826 | Potato | nucleus | 47.27 | 43.33 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 44.55 | 41.18 |
| Os04t0589900-01 | Rice | nucleus | 46.36 | 40.37 |
| PGSC0003DMT400059682 | Potato | nucleus | 38.48 | 38.96 |
| PGSC0003DMT400075370 | Potato | nucleus | 42.12 | 38.83 |
| Zm00001d026036_P001 | Maize | nucleus | 44.85 | 36.82 |
| Zm00001d030053_P003 | Maize | plastid | 46.36 | 36.69 |
| PGSC0003DMT400000467 | Potato | nucleus | 37.58 | 36.58 |
| PGSC0003DMT400032575 | Potato | plastid | 35.45 | 36.11 |
| PGSC0003DMT400035486 | Potato | nucleus, plastid | 28.48 | 36.02 |
| KXG38867 | Sorghum | plastid | 46.06 | 35.93 |
| TraesCS2A01G449500.1 | Wheat | plastid | 44.24 | 35.61 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 44.24 | 35.44 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 44.24 | 35.44 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 46.06 | 35.43 |
| PGSC0003DMT400010017 | Potato | plastid | 33.94 | 35.11 |
| PGSC0003DMT400071865 | Potato | plastid | 32.42 | 34.74 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 46.97 | 34.37 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 46.97 | 34.14 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 46.97 | 34.14 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 46.97 | 33.41 |
| PGSC0003DMT400073848 | Potato | nucleus | 31.52 | 31.52 |
| PGSC0003DMT400079651 | Potato | nucleus | 32.73 | 31.21 |
| PGSC0003DMT400033227 | Potato | cytosol, nucleus, peroxisome | 30.91 | 30.72 |
| PGSC0003DMT400014926 | Potato | plastid | 31.21 | 29.86 |
| PGSC0003DMT400031843 | Potato | plastid | 33.03 | 28.39 |
| PGSC0003DMT400007056 | Potato | nucleus | 33.33 | 27.09 |
| PGSC0003DMT400075372 | Potato | cytosol, nucleus, peroxisome | 25.76 | 26.07 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045147 | EnsemblPlantsGene:PGSC0003DMG400017510 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF17 | PFAM:PF03479 | PFscan:PS51742 | PGSC:PGSC0003DMG400017510 | SEG:seg | SUPFAM:SSF117856 |
| UniParc:UPI000294EA00 | UniProt:M1BH61 | MapMan:35.1 | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017510]
Coordinates
chr8:-:49762743..49769410
Molecular Weight (calculated)
33668.4 Da
IEP (calculated)
8.668
GRAVY (calculated)
-0.442
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQQLQHQQH QNQQQNSGFP FNSVVNTASA AVAAPQHNLD YSDASSPRAT GFSIEPARKK RGRPRKYSPD GNIALGLSPT PVTPISSGVP PTDSGSGGGG
101: DAEGPSSENP SKKARGRPPG SGKKQLDALG AAGVGFTPHV ITVNVGEDIA SKIMAFSQQG PRTVCILSAN GAICNVTLRQ PAIGGGTVSY EGRYEIISLT
201: GSFMRSENNG SSGPSGLSVS LAGADGRVMG GGVSGVLMAA TPVQVIVGSF LAEGKKPKSK VPSSTPPSNM LNFGAPATGE SPLSQGDASS DSSEENGDSP
301: FQHESGPYGN AGQPMHGMSM YANMGWPKSL
101: DAEGPSSENP SKKARGRPPG SGKKQLDALG AAGVGFTPHV ITVNVGEDIA SKIMAFSQQG PRTVCILSAN GAICNVTLRQ PAIGGGTVSY EGRYEIISLT
201: GSFMRSENNG SSGPSGLSVS LAGADGRVMG GGVSGVLMAA TPVQVIVGSF LAEGKKPKSK VPSSTPPSNM LNFGAPATGE SPLSQGDASS DSSEENGDSP
301: FQHESGPYGN AGQPMHGMSM YANMGWPKSL
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
Arabidopsis Description
AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.