Factsheet for PGSC0003DMT400007056

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008940.2.1	Tomato	nucleus	94.83	92.33
VIT_08s0007g04020.t01	Wine grape	nucleus	53.45	60.11
KRH20019	Soybean	nucleus	46.8	50.13
PGSC0003DMT400045285	Potato	cytosol	17.0	46.62
KRH32644	Soybean	plastid	44.83	45.96
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	34.73	41.96
PGSC0003DMT400010017	Potato	plastid	30.54	38.87
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	34.98	38.69
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	34.48	38.25
PGSC0003DMT400032575	Potato	plastid	29.8	37.35
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	32.51	36.07
Zm00001d004924_P001	Maize	cytosol	31.77	36.03
Zm00001d052495_P001	Maize	cytosol, nucleus, peroxisome	31.28	35.98
PGSC0003DMT400071865	Potato	plastid	27.09	35.71
PGSC0003DMT400079651	Potato	nucleus	30.3	35.55
EES15662	Sorghum	cytosol, nucleus, peroxisome	31.03	35.39
EES07975	Sorghum	cytosol	30.79	34.53
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	28.08	34.34
PGSC0003DMT400045147	Potato	plastid	27.09	33.33
PGSC0003DMT400000467	Potato	nucleus	27.83	33.33
TraesCS5D01G138000.1	Wheat	plastid	29.56	32.7
TraesCS5B01G130400.1	Wheat	plastid	29.56	32.61
Os12t0147000-00	Rice	nucleus	30.54	32.55
TraesCS5A01G130500.1	Wheat	plastid	29.31	32.25
HORVU5Hr1G041290.4	Barley	cytosol, nucleus, peroxisome	29.56	32.17
TraesCS5B01G129200.1	Wheat	plastid	29.06	32.15
PGSC0003DMT400075370	Potato	nucleus	28.33	32.12
PGSC0003DMT400059682	Potato	nucleus	25.62	31.9
PGSC0003DMT400052826	Potato	nucleus	27.59	31.11
PGSC0003DMT400014926	Potato	plastid	25.86	30.43
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	35.96	30.17
PGSC0003DMT400035486	Potato	nucleus, plastid	19.21	29.89
PGSC0003DMT400031843	Potato	plastid	26.6	28.12
PGSC0003DMT400073848	Potato	nucleus	22.66	27.88
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	21.18	26.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400007056	EnsemblPlantsGene:PGSC0003DMG400002725	Gene3D:3.30.1330.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:AT_hook_DNA-bd_motif	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF14
PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG400002725	SEG:seg	SMART:SM00384	SUPFAM:SSF117856
UniParc:UPI0002948AC8	UniProt:M0ZSE3	MapMan:35.1	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002725]

Coordinates

chr9:-:3996218..4000730

Molecular Weight (calculated)

40640.7 Da

IEP (calculated)

8.656

GRAVY (calculated)

-0.230

Length

406 amino acids

Sequence
(BLAST)

001: MEDKESTESG SLGVNSEYDS PPPPPAAPVV AAAVAGTNGS FNSGGGGVVV PQVMNMSLGV TGGGGVVGSG GNGVVGSGDK KKRGRPRKYD ADGNLTPQYI
101: KAAAAAAAKA AAAVGSGGGG VVGGAVTSPG GGGVTSPPTG FTITSPVLSS GGFSSSKRGR GRPTGAGNLQ LIASLGELFA HTAGGDFMPH VVTVHTGEDV
201: AGKVYSFVQK GSRGICVLSA NGAVSNVTIR QPGSSGGLLT YEGRFEILAL TGSYTVSDNG GMKTRSGGLS VSLAGPDGRV IGGGIAGSLT AASPIQMVVG
301: SFMPNAFKTH NKRKHHQIEP RMPPVIHSSP DPVSMIRPVS QAPPASNITQ TQTSQIPIHN HGEADNSMSN KDMPNSTSTD TSDCNGSEPT FEQRSYPDIN
401: VSIPME

Best Arabidopsis Sequence Match ( AT2G33620.3 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.