Factsheet for PGSC0003DMT400071865

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010017
PGSC0003DMT400032575
PGSC0003DMT400071865	nucleus
PGSC0003DMT400079651	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	PGSC0003DMT400010017	AT4G12080.1	21798944
AT4G25320.1	PGSC0003DMT400032575	AT4G12080.1	21798944
AT4G25320.1	PGSC0003DMT400071865	AT4G25320.1	23335615
AT4G25320.1	PGSC0003DMT400079651	AT4G25320.1	23335615
AT4G25320.1	PGSC0003DMT400071865	AT5G51590.1	23335615
AT4G25320.1	PGSC0003DMT400079651	AT5G51590.1	23335615
AT4G25320.1	PGSC0003DMT400071865	AT5G51590.1	23335615
AT4G25320.1	PGSC0003DMT400079651	AT5G51590.1	23335615
AT5G51590.1	PGSC0003DMT400071865	AT5G51590.1	23335615
AT5G51590.1	PGSC0003DMT400079651	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g035430.2.1	Tomato	nucleus	95.78	85.26
PGSC0003DMT400079651	Potato	nucleus	66.23	58.96
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	62.01	54.42
KRG92455	Soybean	nucleus	55.84	52.12
KRH34345	Soybean	nucleus	55.84	52.12
KRH09229	Soybean	nucleus	55.19	49.42
KRH38723	Soybean	nucleus	53.9	48.26
PGSC0003DMT400045285	Potato	cytosol	22.08	45.95
PGSC0003DMT400032575	Potato	plastid	46.43	44.14
PGSC0003DMT400010017	Potato	plastid	45.45	43.89
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	45.45	41.67
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	43.18	40.06
GSMUA_Achr1P19840_001	Banana	nucleus	47.73	38.58
CDX94457	Canola	nucleus	44.48	36.24
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	44.81	36.13
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	45.45	35.9
Bra019174.1-P	Field mustard	nucleus	46.1	35.86
CDX92693	Canola	nucleus	46.1	35.86
Bra013886.1-P	Field mustard	nucleus	44.16	35.7
CDX89422	Canola	nucleus	44.48	35.68
CDY49703	Canola	nucleus	46.1	35.59
Os08t0118000-01	Rice	nucleus	42.53	35.22
AT4G25320.1	Thale cress	nucleus	45.45	34.65
AT5G51590.1	Thale cress	nucleus	44.16	32.46
PGSC0003DMT400045147	Potato	plastid	34.74	32.42
KXG24283	Sorghum	plastid	41.23	32.32
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	40.58	31.97
CDY38874	Canola	nucleus	43.83	31.91
Bra029164.1-P	Field mustard	nucleus	43.83	31.84
TraesCS7B01G215600.1	Wheat	plastid	40.58	31.73
CDY32624	Canola	nucleus	43.51	31.6
HORVU7Hr1G075040.1	Barley	plastid	40.26	31.55
CDX87241	Canola	nucleus	39.94	31.46
PGSC0003DMT400059682	Potato	nucleus	33.12	31.29
CDY00488	Canola	nucleus	43.51	31.24
Bra028265.1-P	Field mustard	nucleus	43.51	31.24
TraesCS7D01G312100.1	Wheat	plastid	40.26	31.23
TraesCS7A01G315100.1	Wheat	plastid	40.26	31.16
Bra035899.1-P	Field mustard	nucleus	39.61	31.12
CDY16785	Canola	nucleus	39.61	31.12
CDX86910	Canola	nucleus	39.94	30.83
CDY00271	Canola	nucleus	40.26	30.77
Bra010070.1-P	Field mustard	nucleus	40.26	30.77
PGSC0003DMT400075370	Potato	nucleus	35.71	30.73
CDX99902	Canola	nucleus	43.51	30.52
AT5G62260.3	Thale cress	nucleus	39.61	30.2
CDX91598	Canola	nucleus	40.91	30.07
Bra022555.1-P	Field mustard	nucleus	40.26	29.59
CDY65097	Canola	nucleus	39.94	29.36
CDY30710	Canola	nucleus	37.99	29.18
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	37.66	28.93
PGSC0003DMT400035486	Potato	nucleus, plastid	24.35	28.74
PGSC0003DMT400014926	Potato	plastid	32.14	28.7
PGSC0003DMT400000467	Potato	nucleus	31.49	28.61
PGSC0003DMT400007056	Potato	nucleus	35.71	27.09
PGSC0003DMT400052826	Potato	nucleus	31.49	26.94
PGSC0003DMT400073848	Potato	nucleus	26.95	25.15
PGSC0003DMT400031843	Potato	plastid	30.52	24.48
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	24.35	23.01

Protein Annotations

EnsemblPlants:PGSC0003DMT400071865	EnsemblPlantsGene:PGSC0003DMG400027962	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG400027962	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000296DD04	UniProt:M1CPF5	MapMan:35.1	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027962]

Coordinates

chr6:-:36389034..36394832

Molecular Weight (calculated)

32154.9 Da

IEP (calculated)

8.781

GRAVY (calculated)

-0.258

Length

308 amino acids

Sequence
(BLAST)

001: MAAVIPATSM SVAAPSTEGK KKRGRPKKYR PDGSLNTALS PMPISASIPL SGDFSGWKNS GSRPVESFKK KQQKIELGIP GERVAYSAGA NISPHVAYSV
101: GGNFTPHVFT VNAGEDVAMK IISFAQQGSR AICVLTANGA ISNVTLSQLN SSGGTLTYEG CFEILSLTGS YMSSDTGVTK SRSGGMSVCL SGPDGRVFGG
201: GLAGVFMAAG PVQVVVGSFI PGHQQEQNPK KQRLEHAATF STAIPTNQIY AERTDGAYTG PSTNFTSPIP FPGDNTVSLN SIHNSRISAL ENNISMPEEE
301: SNEQSPSS

Best Arabidopsis Sequence Match ( AT4G25320.1 )
(BLAST)

001: MEEREGTNIN NNITSSFGLK QQHEAAASDG GYSMDPPPRP ENPNPFLVPP TTVPAAATVA AAVTENAATP FSLTMPTENT SAEQLKKKRG RPRKYNPDGT
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS

Arabidopsis Description

AHL3AT-hook motif nuclear-localized protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.